Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0477 ATGTTCCGATTCCACTATCTCTCACCTGGTGATTCTGAATATTCTTGCACTTTAGAGGCAATCAGACAGCATCTTCTCGGTAGTGAAATGGCCGACTTGCCGCTATATTCTCCGGCAACACTCTCCAACAACATCCCCATGCACGGCCAGAGCCCAGGGTATGATGACAGTCATTACATCAATGAAATAGTTCCAGAAGTTGGCACCATTGATAATAACAGTATCCAAATAGAAGATGCAGTAGTAGCGCGTGAGGGTAACGCACCACCAGCAGTTGAGCAGCGTTACCGGGGTGTTAGGCGGCGGCCTTGGGGGAAATTTGCGGCGGAGATCAGAGATCCGGCTAAAAAAGGTGCTAGGGTTTGGCTTGGGACTTATGATACTGCCGAGGATGCAGCTATAGCTTATGACCGAGCGGCTTATGAGATGCGTGGGGCTAAAGCGAAGCTTAATTTTCCTCACCTTGTCGGCTCGAATGTGTGGGAGTCGGTGCGAGCCACTCGGAAGCGGTGCGACATCGCCACCGTGGCCAGCGGTAGCGAGAAGTATTCTTCAAAGCTCAGGCGGATAAAGAAAGAAGAGTGA 585 0.5094 MFRFHYLSPGDSEYSCTLEAIRQHLLGSEMADLPLYSPATLSNNIPMHGQSPGYDDSHYINEIVPEVGTIDNNSIQIEDAVVAREGNAPPAVEQRYRGVRRRPWGKFAAEIRDPAKKGARVWLGTYDTAEDAAIAYDRAAYEMRGAKAKLNFPHLVGSNVWESVRATRKRCDIATVASGSEKYSSKLRRIKKEE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0477 194 CDD AP2 94 155 IPR001471 GO:0003700|GO:0006355
Lele39g0477 194 SUPERFAMILY DNA-binding domain 95 154 IPR016177 GO:0003677
Lele39g0477 194 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
Lele39g0477 194 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Lele39g0477 194 FunFam Ethylene-responsive transcription factor 2 94 154 - -
Lele39g0477 194 Gene3D AP2/ERF domain 94 155 IPR036955 GO:0003700|GO:0006355
Lele39g0477 194 PANTHER DNA-BINDING DOMAIN 90 167 IPR044808 GO:0003700|GO:0009873
Lele39g0477 194 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
Lele39g0477 194 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Lele39g0477 194 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0477 Lele-ChrLele39 3822464 3823048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0477 85 170 AP2-EREBP Transcription Factor Family AT2G44840 63.918 3.59e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele39g0477 AP2 2.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0477 39 3822464 3823048 Lele39g0477 39 3822464 3823048 ECH
Lele37g0930 37 19174770 19175354 Lele39g0477 39 3822464 3823048 hybridization
Lele38g0859 38 20280664 20281341 Lele39g0477 39 3822464 3823048 hybridization