LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g0472	ATGATGAACCCTGATTTTGAATCAATTCAACAGTACCTGATTGAAGAAGATCCTTCCTCCATGACTCTCTTGAATGGCTTCTTCATCACGGACAACCCCACTTCGAACCTCAACTATGTTATTGACACCGCTTTGCCGGAGCAGGGTGTTAGTAACTCCGGCGGTATGGTGTTTTCCGGTGGGAATGACGACAAGTACGCTATGAATCCAGGTGGTTGTTATGGCGATAGGCTTAATCGTGGTAATAACAACACAGGATCTGTGGTGGAGTGTGAAAAGAACGCGCCACCTAGATGGAGGAATTACCGAGGTGTGAGGCGGCGGCCATGGGGGAAGTTCGCTGCTGAAATTCGGGACCCAAAGAGGAATGGCGCGAGGACATGGCTGGGAACCTATGAGACGGAGGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAAAGGTAGAAAAGCTAAGCTCAATTTTCCACACCTCATTGGATCGGAACCACTGCCGGAGCTGGCAAGAGTAGTTGCCGGAAAGAAGCGGCGCCGCCCTCTGGAAGAAAAGCCCCCAGGTCTACCAAATAAGATAGAAATGGTGTGA	594	0.4983	MMNPDFESIQQYLIEEDPSSMTLLNGFFITDNPTSNLNYVIDTALPEQGVSNSGGMVFSGGNDDKYAMNPGGCYGDRLNRGNNNTGSVVECEKNAPPRWRNYRGVRRRPWGKFAAEIRDPKRNGARTWLGTYETEEDAALAYDRAAFKMKGRKAKLNFPHLIGSEPLPELARVVAGKKRRRPLEEKPPGLPNKIEMV	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g0472	197	Gene3D	AP2/ERF domain	100	160	IPR036955	GO:0003700\|GO:0006355
	Lele39g0472	197	ProSiteProfiles	AP2/ERF domain profile.	101	159	IPR001471	GO:0003700\|GO:0006355
	Lele39g0472	197	CDD	AP2	101	161	IPR001471	GO:0003700\|GO:0006355
	Lele39g0472	197	MobiDBLite	consensus disorder prediction	177	197	-	-
	Lele39g0472	197	FunFam	Ethylene-responsive transcription factor 2	100	160	-	-
	Lele39g0472	197	PANTHER	DNA-BINDING DOMAIN	87	169	IPR044808	GO:0003700\|GO:0009873
	Lele39g0472	197	PRINTS	Ethylene responsive element binding protein signature	102	113	IPR001471	GO:0003700\|GO:0006355
	Lele39g0472	197	PRINTS	Ethylene responsive element binding protein signature	141	161	IPR001471	GO:0003700\|GO:0006355
	Lele39g0472	197	SUPERFAMILY	DNA-binding domain	101	160	IPR016177	GO:0003677
	Lele39g0472	197	Pfam	AP2 domain	101	151	IPR001471	GO:0003700\|GO:0006355
	Lele39g0472	197	SMART	rav1_2	101	165	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g0472	Lele-ChrLele39	3787501	3788094	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g0472	101	164	AP2-EREBP Transcription Factor Family	AT2G44840	85.938	7.46e-36	123

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele39g0472		AP2	1.2e-13	CL0081