Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0471 ATGATCCCTAATCATTCTCCTTTCGAATCAGTTCAAGAATACCTGATTGAGGATGATCGTCCTTCCTTCAAGGCTCTCATGATGAACACGGCTTCACCGGAGCAGGGTGTTAGTAGCTCCACTGGTACAGTCTTTTCTGCCGAGAATGCCGACACGGCTGTGACACCATATGACAACAGAGTAAATGATGGTAATAACGCAGGATCTGTGGCGCGTGAAGTGAACGCGCCATCAAGGTGGAGGAATTACCGAGGAGTGAGGAGGCGGCCGTGGGGGAAGTTCGCGGCTGAAATCCGGGACCCGAAGAGAAACGGTGCAAGGACATGGCTGGGAACTTATGAGAAGGAAGAGGATGCAGCTTTGGCTTATGACACAGCAGCTTTCAAGATGCATGGGAGAAAAGCCAAGCTTAATTTTCCACACCTCATCGGATCCAAAACACTGCCGTCGGAGCCAGTAAGAGTGGTTGCAGCTGGACAGGAGCGACGCAGCTTGCCGGAACCTTCATCGCCGTCGAACAGTACATCTGAGGAATATGATGGATCTCAAGGGGCAAGTAAGAAGAAGAGCCTCACTTGTCTATTGAACAAGTTAGCAACCAATAGAAGCCATGTCAGATTCGGTTGA 627 0.5024 MIPNHSPFESVQEYLIEDDRPSFKALMMNTASPEQGVSSSTGTVFSAENADTAVTPYDNRVNDGNNAGSVAREVNAPSRWRNYRGVRRRPWGKFAAEIRDPKRNGARTWLGTYEKEEDAALAYDTAAFKMHGRKAKLNFPHLIGSKTLPSEPVRVVAAGQERRSLPEPSSPSNSTSEEYDGSQGASKKKSLTCLLNKLATNRSHVRFG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0471 208 MobiDBLite consensus disorder prediction 158 191 - -
Lele39g0471 208 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Lele39g0471 208 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Lele39g0471 208 MobiDBLite consensus disorder prediction 165 191 - -
Lele39g0471 208 FunFam Ethylene-responsive transcription factor 2 81 141 - -
Lele39g0471 208 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Lele39g0471 208 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Lele39g0471 208 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Lele39g0471 208 PANTHER DNA-BINDING DOMAIN 52 183 IPR044808 GO:0003700|GO:0009873
Lele39g0471 208 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Lele39g0471 208 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Lele39g0471 208 CDD AP2 82 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0471 Lele-ChrLele39 3779788 3780414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0471 83 178 AP2-EREBP Transcription Factor Family AT2G44840 68.750 9.90e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele39g0471 AP2 1.6e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0471 39 3779788 3780414 Lele39g0471 39 3779788 3780414 ECH
Lele37g0934 37 19206839 19207432 Lele39g0471 39 3779788 3780414 hybridization
Lele38g0861 38 20292702 20293394 Lele39g0471 39 3779788 3780414 hybridization