Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0470 ATGAGCCACAATAATCTTTCTCCTTTAGATCCAGTTCAGCAGTACCTTCTTCAAGATGATCCTTCCTCTATGATTCTCATGAATGTCTTCTTCACGCGTAATACTAACAACCCTACTCTTTTTAACCCTAGCTGCCACATTTCTTCACCGGAGCTGGGTGCTAGTAACTCCAGTGGCATGGCGTTTTCCGGTGGCGAGCATGACAACGCTGCGAAACCTCCTGTAGGTGATGATGATGATGATAGGTTTAATCCTAACAGCAATGCAGGATCTGTGGCGCGTGAAGGGGACGCGCCACCAAGATGGAGGAACTACCGAGGCGTTAGGCGGCGGCCATGGGGGAAGTTTGCGGCCGAGATCCGGGATCCAAAGAAGAACGGTGCGAGGATATGGTTGGGAACTTATGAGAGGGAGGAGGATGCAGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAGAGGTAGAAAAGCGAAGCTCAATTTTCCACACCTCATTGGGTCGGAACCACTACCGGAGCAGCCAAGAGTAGTTGCCGGACAGAAGCGGAGCCACTCGTCGGAAGCTTCATGGCCATCTGAGGATGATGGATCTCAAGGGTCATGTAAGAGGCAGAAGAACCTGGCGGATCTATTGAACAAGTTAGCAACAAATGGAAATCTAAGCCACAAGCTTGAAATGGTATTCATGAAGGCATAG 696 0.4943 MSHNNLSPLDPVQQYLLQDDPSSMILMNVFFTRNTNNPTLFNPSCHISSPELGASNSSGMAFSGGEHDNAAKPPVGDDDDDRFNPNSNAGSVAREGDAPPRWRNYRGVRRRPWGKFAAEIRDPKKNGARIWLGTYEREEDAALAYDRAAFKMRGRKAKLNFPHLIGSEPLPEQPRVVAGQKRSHSSEASWPSEDDGSQGSCKRQKNLADLLNKLATNGNLSHKLEMVFMKA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0470 231 ProSiteProfiles AP2/ERF domain profile. 104 162 IPR001471 GO:0003700|GO:0006355
Lele39g0470 231 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Lele39g0470 231 PANTHER DNA-BINDING DOMAIN 79 195 IPR044808 GO:0003700|GO:0009873
Lele39g0470 231 MobiDBLite consensus disorder prediction 165 202 - -
Lele39g0470 231 SMART rav1_2 104 168 IPR001471 GO:0003700|GO:0006355
Lele39g0470 231 SUPERFAMILY DNA-binding domain 104 163 IPR016177 GO:0003677
Lele39g0470 231 FunFam Ethylene-responsive transcription factor 2 103 163 - -
Lele39g0470 231 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
Lele39g0470 231 MobiDBLite consensus disorder prediction 56 106 - -
Lele39g0470 231 MobiDBLite consensus disorder prediction 179 202 - -
Lele39g0470 231 CDD AP2 104 164 IPR001471 GO:0003700|GO:0006355
Lele39g0470 231 PRINTS Ethylene responsive element binding protein signature 105 116 IPR001471 GO:0003700|GO:0006355
Lele39g0470 231 PRINTS Ethylene responsive element binding protein signature 144 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0470 Lele-ChrLele39 3773461 3774156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0470 105 175 AP2-EREBP Transcription Factor Family AT2G44840 81.081 4.24e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele39g0470 AP2 1.7e-13 CL0081