Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0454 ATGCACTCGAGCCAGTTCGACGGCGCCTCAGCCTTCTCCGGCGGTGGTTTTATGCCTTCTCAGGCAACTCAAGGCCCTGAACCTTCCTTCTCCTACTCCAAGAATCGTGATGCTCAGTCATTGCTTCCTCTGACAGTCAAGCAGATAAATGATGCATTTCAGTCAAGTGATGACAAGTCTAATATGCTTATCGATGGCGTGAATGTTAATAATGTCACTCTAGTAGGAAAGGTGTGCAACAAAGCTGGAAGGATTACTGATGTTACTTTTGTACTAGACGACGGGACTGTAAGGATTGAGTGTAGTAAATGGCTCCAGGAAGATGTAGACACCAATGAAGCGGAGGGGATCAGGGATGGAAGGTACGTGCGCTTACATGGACACTTGAAAGGTTTTCAGGGAAAAAGGACCTTAAATGTCTTCTCTTTTAGGCCTTTGAACGACTTTAACGAGATTGCAAGTCACTTCATTGATTGTATATACGTCCATCTCTACAATACCAGGATACGGGGTAGTGTGCCGAATCAGCAATCTATGAACAATTCCTCACCTATTAATCCCACAAGAGGTTATCAAGCTGCCCCTCCAAATCAATTTTCTGGTCAGCACAACAATGGTCAGAAGAGTGTTGAAGATATGGTCTTAGATATCTTGCATCTTCCCTCGAACAGGGCAAAAGAAGAGGGTGTCTCTCTGGATCTTATTGCACTGCATCTTGGAATTCCCTTGGAGAAGCTCACGTTATCCATAAAAAATCTTATCGAGGAAGGCACCATTTATGAAGCTATAAATGATCATTACAAGTCTATTAATGGTTGA 819 0.4347 MHSSQFDGASAFSGGGFMPSQATQGPEPSFSYSKNRDAQSLLPLTVKQINDAFQSSDDKSNMLIDGVNVNNVTLVGKVCNKAGRITDVTFVLDDGTVRIECSKWLQEDVDTNEAEGIRDGRYVRLHGHLKGFQGKRTLNVFSFRPLNDFNEIASHFIDCIYVHLYNTRIRGSVPNQQSMNNSSPINPTRGYQAAPPNQFSGQHNNGQKSVEDMVLDILHLPSNRAKEEGVSLDLIALHLGIPLEKLTLSIKNLIEEGTIYEAINDHYKSING 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0454 272 SUPERFAMILY Nucleic acid-binding proteins 41 168 IPR012340 -
Lele39g0454 272 PIRSF RPA32 1 271 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele39g0454 272 Pfam OB-fold nucleic acid binding domain 72 144 IPR004365 GO:0003676
Lele39g0454 272 MobiDBLite consensus disorder prediction 174 206 - -
Lele39g0454 272 FunFam replication protein A 32 kDa subunit A-like 34 168 - -
Lele39g0454 272 Pfam Replication protein A C terminal 163 265 IPR014892 -
Lele39g0454 272 Gene3D - 202 271 IPR036388 -
Lele39g0454 272 SUPERFAMILY "Winged helix" DNA-binding domain 205 270 IPR036390 -
Lele39g0454 272 Gene3D - 33 168 IPR012340 -
Lele39g0454 272 PANTHER REPLICATION PROTEIN A-RELATED 5 270 IPR040260 -
Lele39g0454 272 MobiDBLite consensus disorder prediction 15 34 - -
Lele39g0454 272 CDD RPA2_DBD_D 71 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0454 Lele-ChrLele39 3600665 3604268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0454 3 270 Core DNA Replication Machinery Family AT2G24490 45.714 1.30e-77 235