Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0447 ATGGCGGAGAAAGATGATGGGTTGGGCTTGGGTTTGAGTCTGAGCTTGGGACTGGGCATGAATCCGTCTCCTTCTTTGAAGGAAAGTCTCATGCAGAAGAAACCTTCTCAGACTCTTCTCAATCAAGGAGCTTCCTGGAATGATATTTTCCAGCTACCTGATCGGAGCTGCGAGGCGAGAACGATGCTCCGGGGAGTGGATGTAAATTTAGCGCCGCCGCCGTCAACAACGGTGGTGGACTGTGACGACGAAAATGGCGTCTCCTCACCGAACAGTACTGTGTCGAGCATCAGTGGAAAGCGGAGCGAGAGAGAGTCTATTGGCGGCGAGCATGAAGCCGAGCGTGCGTCATGTTCTCGAGGGAGCGACGATGATGATGGCGGCGGCGGCGGCGGCAGAGAGGGAGACGGAGACGGAGACGGAGACGTAGACGGTGATACCTCGAGGAAGAAGCTCCGGCTGTCGAAGGAACAATCTATTGTGCTTGAGGAAACGTTCAAGGAGCACAATACCCTCAATCCGAAGCAAAAACAGGAATTGGCAAAACAGCTGAATCTGAGGTCGAGACAAGTGGAAGTCTGGTTTCAGAACAGGAGGGCAAGGACCAAGTTGAAGCAAACGGAAGTGGATTGTGAGTATTTGAGGAGATGTTGTGAGACCTTAACTGAAGAGAATAGGAGGCTGCAAAAGGAAGTTCAAGAGCTTAGGGCACTAAAACTTTCCCCACACTTCTACATGCATATGAATCCTCCCACCACTCTCACAATGTGCCCTTCCTGCGAGCGAGTCGCAGCCGCCGGAACTCCTCCCGCCCCATCGAGCTCTAGCATTCAGAGGCCGGTGCCCCTCCTCCCCTGGGCGGCGGCTAACTCGAATCGGAACCGCCCGACTGACAGCTTAAATCCCCGCCCGTAA 915 0.541 MAEKDDGLGLGLSLSLGLGMNPSPSLKESLMQKKPSQTLLNQGASWNDIFQLPDRSCEARTMLRGVDVNLAPPPSTTVVDCDDENGVSSPNSTVSSISGKRSERESIGGEHEAERASCSRGSDDDDGGGGGGREGDGDGDGDVDGDTSRKKLRLSKEQSIVLEETFKEHNTLNPKQKQELAKQLNLRSRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKEVQELRALKLSPHFYMHMNPPTTLTMCPSCERVAAAGTPPAPSSSSIQRPVPLLPWAAANSNRNRPTDSLNPRP 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0447 304 Gene3D - 153 203 - -
Lele39g0447 304 MobiDBLite consensus disorder prediction 290 304 - -
Lele39g0447 304 MobiDBLite consensus disorder prediction 67 154 - -
Lele39g0447 304 CDD homeodomain 149 206 IPR001356 GO:0003677
Lele39g0447 304 ProSiteProfiles 'Homeobox' domain profile. 145 205 IPR001356 GO:0003677
Lele39g0447 304 Coils Coil 211 241 - -
Lele39g0447 304 Pfam Homeodomain 149 203 IPR001356 GO:0003677
Lele39g0447 304 ProSitePatterns 'Homeobox' domain signature. 180 203 IPR017970 GO:0000981|GO:0006355
Lele39g0447 304 MobiDBLite consensus disorder prediction 81 102 - -
Lele39g0447 304 FunFam Homeobox-leucine zipper protein 18 134 210 - -
Lele39g0447 304 MobiDBLite consensus disorder prediction 265 304 - -
Lele39g0447 304 Pfam Homeobox associated leucine zipper 205 239 IPR003106 GO:0006355|GO:0043565
Lele39g0447 304 MobiDBLite consensus disorder prediction 103 154 - -
Lele39g0447 304 SMART halz 205 248 IPR003106 GO:0006355|GO:0043565
Lele39g0447 304 Pfam HD-ZIP protein N terminus 1 105 IPR006712 GO:0005634
Lele39g0447 304 SUPERFAMILY Homeodomain-like 136 206 IPR009057 -
Lele39g0447 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 274 - -
Lele39g0447 304 MobiDBLite consensus disorder prediction 18 36 - -
Lele39g0447 304 MobiDBLite consensus disorder prediction 1 36 - -
Lele39g0447 304 SMART HOX_1 147 209 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0447 Lele-ChrLele39 3544168 3545999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0447 45 288 Homeobox Transcription Factor Family AT3G60390 63.707 2.00e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele39g0447 HD-ZIP_N 6.5e-31 No_clan