Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0420 ATGTTTTCCTTCGCTTCTTCATCGTCCTCTCGTCAACCCAAATTGACATTCTCATACGACGTCTTCTTAGCTTTCAATGGTCTTGAAGAAAGGGTAAGAACCTTTCTTCAGAATAGTTTAAGGGATGTTGGAATCACAACTTTCATTGGTGACTTGGCCAAGGATTCATGGGAGATGAAAGAAAGGTGCAGAATTGTGGTGGTGCTAATCACACCACAGTTGGTTGTCTCCGACATATGTCTTGAGAGAGTGATGAGCATGATGTTGGAACCGGCAAAAACAGTGTTGCCTTTCTTCTATGGAGTGAACCAGGATAAAGTGCGTTTGCAGTTCGAGAGATTCAATTTCGGAACATATGTTGAAGATATGGGGGGGCAGTCGGAGTTGGAGAGTTTGCACCGAAGAGCCGACGCTGTGTATAATTCGCTCTATGGCTTCACGCTCTCACCTGATCTTGGTGATCAAGAAGTAGTCAATAACCTTATTGCTAAAGCCATATCACAAGTTGGAGTGCAATCTCGTGTGAAAGAAGTGCTTTTCCAATTAGGCTGGAAATCCAATCATAAGAAAGGTACAATCATAGTCGGAATTTGGGGGGTTGCAGGTATTGGTAAAACTACCATCGCCAGAGCTATTTATGATACAATTGGTGTTCATTTTAAATGCAAAAGTTTCCTTGCCAATATCAAGGATGTGTGGGAGACCAATAATGGTCAAGTTCTTCTACGAAAGCAACTTCTTTCAGATATTCAAGTGAATCATACGCAAGGACCTTATAGAAGAGCCCTAATTGTTTTTGATGATGTAAATCAAGTAGACCAACTCACTGAACTGTGTGGAAATAGAGAGCAGTTCGCTAAAGGGAGTTTGATTTTCATTACATCAAGAAATAAGGGTTTATTTGATCACTTTGTTGACAAATCGTATGAAGTGAAAAAGTTGGATGATTGGGAGTCTCTTCAGCTTTTTGGTTGGCATGCATTTAAAAACAACTTTGTCCAAACCAATGATTTTGTGAATCTTTCACAGGAAATAATTACTTTATGTAAAGGGCTACCATTGATTCTTGAAGTTATAGGCTCTCTTTTCCATAACAAGACAACATCAGAGTGGCAAAAGGTATTGAATAAATTAGAAAACATTCCTAGTGATCAAATACAACATATGCTTAAAATAAGCCTTGACTTATTAGATGTTTCAGAGAAGAAACTATTTTGTGATATAGCACGCTTTCATGTGGGCCGAAGTAAAATTGATTTTACACATTTGTTTGAGGGCTTCCCCATAGAAAGGGGAATGCAAGTACTTGTTGACCGTAGCCTTGTAAAGGTTGTTGATGACAAGATTCATGTGCATGATTTACTACAAGAGATAGGGAGGGGAATCTCTACAAACAATCCAAAGTTCACATATATCTATGATGTATTCTTAAGTTTTAGAGGTGAGGATACGCGTAAATCATTTGCTACTCATCTTCATACTACTCTAAAACAAGCAGGAATTGAGGTTTTCATAGATGAAGAAAGGATGGAAAGGGGAGAAAATATTTCATCTTCACTACTACAAGCAATTGAAAGTTCAAGAATTTCAATCATTATATTCTCAAAGAATTATACTAACTCTAGTTGGTGCTTGCAAGAATTAGAGAAAATCATGGAGTGTTACAAAACAACTGATCAAGAGGTTTTTCCAATATTCTATGATGTGCAACCATCTGAAGTTCGTAAACAAAAAAATGCCTTTGAAAAAGCACGGGGACGGCTTAGAGTGAGACCCTCAAGTAGTAAAGGTAAGACATTGACAAACAATTTGAAGAGAGTCCTTACCGAAGCTGCCAACTTATCAGGGTGGGATATGCAAAACTACCGAACTGAGGCTGAGCTACTTGACGATGTTGTTCAAACTATCACAATGAGGATAGACAACAGCAAACACATGTTTGTTGCTCACCATCCAAAAACAACACTGGAACAATAG 1977 0.3834 MFSFASSSSSRQPKLTFSYDVFLAFNGLEERVRTFLQNSLRDVGITTFIGDLAKDSWEMKERCRIVVVLITPQLVVSDICLERVMSMMLEPAKTVLPFFYGVNQDKVRLQFERFNFGTYVEDMGGQSELESLHRRADAVYNSLYGFTLSPDLGDQEVVNNLIAKAISQVGVQSRVKEVLFQLGWKSNHKKGTIIVGIWGVAGIGKTTIARAIYDTIGVHFKCKSFLANIKDVWETNNGQVLLRKQLLSDIQVNHTQGPYRRALIVFDDVNQVDQLTELCGNREQFAKGSLIFITSRNKGLFDHFVDKSYEVKKLDDWESLQLFGWHAFKNNFVQTNDFVNLSQEIITLCKGLPLILEVIGSLFHNKTTSEWQKVLNKLENIPSDQIQHMLKISLDLLDVSEKKLFCDIARFHVGRSKIDFTHLFEGFPIERGMQVLVDRSLVKVVDDKIHVHDLLQEIGRGISTNNPKFTYIYDVFLSFRGEDTRKSFATHLHTTLKQAGIEVFIDEERMERGENISSSLLQAIESSRISIIIFSKNYTNSSWCLQELEKIMECYKTTDQEVFPIFYDVQPSEVRKQKNAFEKARGRLRVRPSSSKGKTLTNNLKRVLTEAANLSGWDMQNYRTEAELLDDVVQTITMRIDNSKHMFVAHHPKTTLEQ 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0420 658 Gene3D - 468 646 IPR035897 -
Lele39g0420 658 Gene3D - 2 128 IPR035897 -
Lele39g0420 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 408 IPR027417 -
Lele39g0420 658 PRINTS Disease resistance protein signature 349 363 - -
Lele39g0420 658 PRINTS Disease resistance protein signature 256 270 - -
Lele39g0420 658 PRINTS Disease resistance protein signature 194 209 - -
Lele39g0420 658 Gene3D - 313 398 IPR042197 -
Lele39g0420 658 SMART till_3 18 143 IPR000157 GO:0007165
Lele39g0420 658 SMART till_3 472 614 IPR000157 GO:0007165
Lele39g0420 658 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 462 IPR044974 GO:0006952
Lele39g0420 658 SUPERFAMILY Toll/Interleukin receptor TIR domain 469 617 IPR035897 -
Lele39g0420 658 Gene3D - 151 311 IPR027417 -
Lele39g0420 658 Pfam TIR domain 473 639 IPR000157 GO:0007165
Lele39g0420 658 ProSiteProfiles TIR domain profile. 471 640 IPR000157 GO:0007165
Lele39g0420 658 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 114 IPR035897 -
Lele39g0420 658 ProSiteProfiles TIR domain profile. 17 143 IPR000157 GO:0007165
Lele39g0420 658 FunFam Disease resistance protein (TIR-NBS-LRR class) 470 642 - -
Lele39g0420 658 Pfam NB-ARC domain 187 399 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0420 Lele-ChrLele39 3036423 3042195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0420 195 462 WRKY Transcription Factor Family AT5G45050 32.155 1.25e-31 130