Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0418 ATGTCGCCTCTCAAATGTTTAGTCTTTGCGATTGCACTTGCTTGTTGCCGGAAGTGGAGACCCCGAGACGCTGAGGAGGACCCTGATGAAGTTCGCCTTGGTCAGATTAAAAGGTTTTCCCTGTGTGAGCGGCAAGTTGCAACGGACAACTTTAGTAACAAAAACAGTCTGAGTATATGTGAATTTGCTGAGGTTTACAAAGGACGATTAGCCGATGGGTCTCTGGTTGCAGTGAAAAGACTTAAAGAGGAACGCACTCATCAGGGTGGCGGAGAGCGGCGATTTCAAACAGAAGTAGAAATTATCAGCTTAGCTGTCCACCGTAATTTGCTGCGGCTGCGTGGTTTTTGCATGACACCAACTGAACGGTTACTGGTGTATCCTTTCATGGCTAACGGTAGTTTGGTATCATGGTTACGAGAATACCTTTCCACCGGAAATTCTTCGGAGAAGACTGATGTTTTTGGTTATAGCGTGATATTTCTTGAACTAATAACTGGACAGAGAGCTTTCGATCTTACACGATTTGTGATAGGCCTTGTGAGAGACAAGGAATTGGAAACACCTATGGATGCCGATTTGGGGGATGAATATGATGAAGATGAGGTCGAGCTACTACTCCAAGTGGCCTTGCTATGCACACAAAACTCGGCAATGGAAAGACCAAAGATGTCTGAGGTGGTAATCATGCTTGGTGATGGTTTGGCTGAAAAATGGGATCATTGGGTGAAAGACGAGATGTATCCGTTACGTAGTGGAACCCTTCTCCCTCAAGCTGGTTGGGTGAACTCCGATTCAGATATCCTAGCAGAAGAACTGTCAAGTAGCAGATAA 834 0.4544 MSPLKCLVFAIALACCRKWRPRDAEEDPDEVRLGQIKRFSLCERQVATDNFSNKNSLSICEFAEVYKGRLADGSLVAVKRLKEERTHQGGGERRFQTEVEIISLAVHRNLLRLRGFCMTPTERLLVYPFMANGSLVSWLREYLSTGNSSEKTDVFGYSVIFLELITGQRAFDLTRFVIGLVRDKELETPMDADLGDEYDEDEVELLLQVALLCTQNSAMERPKMSEVVIMLGDGLAEKWDHWVKDEMYPLRSGTLLPQAGWVNSDSDILAEELSSSR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0418 277 ProSiteProfiles Protein kinase domain profile. 51 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele39g0418 277 SUPERFAMILY Protein kinase-like (PK-like) 29 231 IPR011009 -
Lele39g0418 277 FunFam Somatic embryogenesis receptor kinase 1 22 129 - -
Lele39g0418 277 Gene3D Transferase(Phosphotransferase) domain 1 125 247 - -
Lele39g0418 277 Pfam Protein tyrosine and serine/threonine kinase 54 141 IPR001245 GO:0004672|GO:0006468
Lele39g0418 277 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 140 240 - -
Lele39g0418 277 Gene3D Phosphorylase Kinase; domain 1 22 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0418 Lele-ChrLele39 3014566 3016011 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0418 141 266 Receptor kinase-like Gene Family AT4G33430 56.944 1.58e-40 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele39g0418 PK_Tyr_Ser-Thr 4.1e-11 CL0016