Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0414 ATGTCGTCTCCAAACGCAACGCTTCGCCATGCCACTTCTCCTGAAACAAACCTCTCCTCCAAATCTCACTTGATCTCACCCGCATCATCACGTGCCACTATTCCTTCTTCCTCAAAGGCGTCTTCATCTTCATCACCAAACCCTACTTTAACGAAGGTTAAACTCAGAAGAAAAGGCATTTATCTTCGAGCATATGATCAGGAGATAAACAACTACGAGCCGTCGTCTCCGTATTACAAGGGTCTCCTTTACACACCTATCGATATTAACGACGAATATGGTTCGCAGAATCAACATCATCATCATCACCAGAACAATCTGAACAGTAGTGGCGGCGGCCGCCCTAATAATAGTAATTCTAGGGTTCCGGCGACGACGACTTCTGAAGCTCCGTACTACAGAGGGCTTACAAACTTTTCACTGGATATTATTCATCATGGAGGACAAGATAGTTGGAGAAACATTCATGAGGTTGAAGGAGCGTACGAGTGTAGTCCATATTCCAGAGGCCTCCTCACTGATAGCTCTCTAGCAATGGCCATTCGTAAACTTGAGGGAGGAGGAGGTGTTGTGCCAACTAGCTCCTCATCCTTTGGGTTCCACATGAACTTAGGTTTATGCTTAGGTGGTAAGGATGAGATGACGGATTTGGATAGACAGCATACTTTATCGGCACTATCGCCGCCGGCACCGATACCATTACCGTCCCCGTCATTACCACTGTCACCTCCGCCACTGATGTCTATGTTTCCATCCAAAGGTAAGACTGCTTTAAGCATGGAGCCGAAAGTAGAAGATGGTGGGAAGGCTTTGGGGGAGAGAGAATCAGAAGAAAGTGAAGAGGAAAAAGCTGTGGAAATTGATGAGAATAATAAGGAGGAGGCCACGAATGAATCTGCTGGTTTACCAAATGAGGAGGTAAACAAGGAGAAGTCCTTGAGAGAGAGTGTTGCCAATAATATTTCTGAACAAACAGTGTCTGCATCATCATCGCCAGAATCTTCAAGTAATAAAGATGGCCCCCATCAGGAGATTAAGGAAGACGAAGATAAAGAAGAAGGAAGCTTGATAAAAGAGTATGTGTGGGCTAGCAAATATCAACCCAAAGCATTGAAAGAATTTATCTGCCACAAACACATTGTTTCTCAGCTCCTAACAATGATAAAAGAGGGATGTGTGTGTGATCATTTTATATTTGAAGGACCACCTGGTGTTGGAAAGAGAACCATGATACGAGCTCTACTTCGAGAGGTCTTCGGCCACGACCAAGTCAAGGTGACTGAAGAAGATAGAACATTCTTATTAAAGGCCGAGACACTATCAACAGAATCGTTGTTGTACATAAAGTGGATGGTGGAAAGATATAATAAGGGTTGCAACAAAGTCTTCTTTTGCTGCTCTGATGAATCTAAGCTCCAAACTGTCAAACCTATCTGCAAAACTTTTCGACTTTCTCCTCCTTCCACTCAAGAGATTGTTGAAGTTTTGGAATACATAGGGAAGGTAGAAGGAAAAGAATTGTCCCTTCAACTTCTTACTAAGGTTGTTGAGAAGTCAAAGAACAACCTTCGGCAGGCCATTCGCTCTTTGGAGGCAACTTGCCATAACAAGGATTCAATCAAAGAAGACGAGTTAATTTTAACAGGATGGGAAGATGACATCTCAAATATTGCTAAGAATATACTCAAAGAGCAGAGTTCAAAACAGTTATACAAGATTCATGTGAAGCTTCAAAGTCTCATGATTCACAAGGTTTCACCTGACTTTGTTTACAAGAAAGTTTATGGGATCAAGATGAGAATTGGAAAGCATTCTGGTCATGCTCACAACAAAGAAAGGGAATCTGACGAAAAGAACAATGAAATGACAAAGAAGATTAATGCTCGCACTTACTCTGAAGTTGAAGAATTCATAGCAAAACTCATGAGTTGGTACAAGACGGCATCTTCAAAAGTGGCCATATGTAAGTAA 1971 0.4226 MSSPNATLRHATSPETNLSSKSHLISPASSRATIPSSSKASSSSSPNPTLTKVKLRRKGIYLRAYDQEINNYEPSSPYYKGLLYTPIDINDEYGSQNQHHHHHQNNLNSSGGGRPNNSNSRVPATTTSEAPYYRGLTNFSLDIIHHGGQDSWRNIHEVEGAYECSPYSRGLLTDSSLAMAIRKLEGGGGVVPTSSSSFGFHMNLGLCLGGKDEMTDLDRQHTLSALSPPAPIPLPSPSLPLSPPPLMSMFPSKGKTALSMEPKVEDGGKALGERESEESEEEKAVEIDENNKEEATNESAGLPNEEVNKEKSLRESVANNISEQTVSASSSPESSSNKDGPHQEIKEDEDKEEGSLIKEYVWASKYQPKALKEFICHKHIVSQLLTMIKEGCVCDHFIFEGPPGVGKRTMIRALLREVFGHDQVKVTEEDRTFLLKAETLSTESLLYIKWMVERYNKGCNKVFFCCSDESKLQTVKPICKTFRLSPPSTQEIVEVLEYIGKVEGKELSLQLLTKVVEKSKNNLRQAIRSLEATCHNKDSIKEDELILTGWEDDISNIAKNILKEQSSKQLYKIHVKLQSLMIHKVSPDFVYKKVYGIKMRIGKHSGHAHNKERESDEKNNEMTKKINARTYSEVEEFIAKLMSWYKTASSKVAICK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0414 656 MobiDBLite consensus disorder prediction 314 338 - -
Lele39g0414 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 536 IPR027417 -
Lele39g0414 656 FunFam replication factor C subunit 3 488 546 - -
Lele39g0414 656 SUPERFAMILY post-AAA+ oligomerization domain-like 549 607 IPR008921 GO:0003677|GO:0006260
Lele39g0414 656 Coils Coil 278 298 - -
Lele39g0414 656 MobiDBLite consensus disorder prediction 1 52 - -
Lele39g0414 656 MobiDBLite consensus disorder prediction 223 352 - -
Lele39g0414 656 Gene3D - 360 438 IPR027417 -
Lele39g0414 656 MobiDBLite consensus disorder prediction 228 247 - -
Lele39g0414 656 MobiDBLite consensus disorder prediction 1 51 - -
Lele39g0414 656 MobiDBLite consensus disorder prediction 259 278 - -
Lele39g0414 656 MobiDBLite consensus disorder prediction 100 129 - -
Lele39g0414 656 Gene3D - 549 645 - -
Lele39g0414 656 MobiDBLite consensus disorder prediction 92 129 - -
Lele39g0414 656 Gene3D - 488 548 - -
Lele39g0414 656 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 433 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0414 Lele-ChrLele39 2933587 2940519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0414 437 646 Core DNA Replication Machinery Family AT5G27740 27.027 4.22e-21 93.6