Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0325 ATGGTGACATACGGTGGTTCTGTGTTACCCAGCGGAGCAACCGAGACTACTCGGAAACGTTTACTTCAAGCAAGATCGTTTCGGGGCCGCCATCGGTGCTTATACCCAGGCAATCACTTTGTGCCCCTAACATTCCGGTTTATTGGACGAATCGTGCTGTGTTATCATAAGCGCAATGACTGGGCTAGAGCTGAGGAAGACAGCCGGAGAGCTATTCAACTAGACAACAAGTCGGTTAAGGCCCATTATATTTTGGGACTTGCATTGCTACAGAGACAAGAATATATCGAGGGGGTCAGAGAATTGGAGAAGGCTTTGGATCTCGGGAGGGTCGCCGATCCTAATGGCTATATGGTAGAGGAGATCTGGCAAGAGCTTGCAAAAGCAAAATATCTTGAGTCGGCAACTGCATCTACCAAGAGATCATGGGAATTGCAGCGTTTGAAAGAAGCTTGTGAGTGTGCTCTGAATGAAAAGCATTCTAAAATGGAAGGGTTTATAGATGAAGTTGAAGCTTTGCGCTCAGTAGAACTTGATGCTTTAAAAAGAGTTTCTGTGAAGCTGCAGGGCCGAATGGCTACAGAGATTACGTATGCTTTAATGAGCTTCTCCAAGGATGATGATGACAAAGTCAAGGATTCATGA 645 0.4574 MVTYGGSVLPSGATETTRKRLLQARSFRGRHRCLYPGNHFVPLTFRFIGRIVLCYHKRNDWARAEEDSRRAIQLDNKSVKAHYILGLALLQRQEYIEGVRELEKALDLGRVADPNGYMVEEIWQELAKAKYLESATASTKRSWELQRLKEACECALNEKHSKMEGFIDEVEALRSVELDALKRVSVKLQGRMATEITYALMSFSKDDDDKVKDS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0325 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 52 185 IPR045200 GO:0000209|GO:0061630
Lele39g0325 214 Gene3D Tetratricopeptide repeat domain 34 165 IPR011990 GO:0005515
Lele39g0325 214 SUPERFAMILY TPR-like 50 130 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0325 Lele-ChrLele39 2297138 2300123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0325 53 184 U-box Gene Family AT3G07370 56.618 7.54e-47 154