Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0324 ATGGCGAAGCCGGGAGTGTTGGAATCCGATCCAACGGTGACGGCGAAGGGAATGGAGCTGAAGAAGGAGTTGCAGAGATTGGTGAAGTCAATTGTTGAAGATGAAGATCATTACGGCATTGAGACCATTGATACGACGATGGAGACGCTGTCGTTGTTGAAGCAGCTGAAGCTCAGCAAGCGATCGACGACGACGACGTCGTCTTCTTCGTCACCGTCTTTGAAGCTTCGCCATAAAACCGGTTTGAATTGCCCCGAAGAATTCAAATGCCCTCTTTCCAAGCAATTGATGAGAGATCCTATCATTGTGGCTTCTGGTCAGACGGATGACAGAACGTTCATTCAAAAGTGGCTGAAAGACGGAAACCGGACATGCCCTCGGACACAGCTAAAAGCCGCCGCGAAGGAGCTCCGGATTTTGACAAAGGAAATGCCTTGTTTCCGGGTATTTTTCGGCGATTTTTTGGGTGCCATTCCCAAATTGCTTAAACCAATCTGTGGTAGTCACTCTCTGGGTAATGTTCACCCTGACCTCCAAGAAGATTTTATCACAACACTCCTTAATATCTCCATCCATGACAACAAGAAGAAGCTTGTAGCCGAAACTCCCATGGTAATTCCTCTCCTCATGAGGGCATTGAGATCAGGAACAATAACAACACGAAGCAATGCCGCCGCCGCCCTTTTCACTTTGTCGGCTCTAGACTCAAACAAGGAACTTATAGGGAAATCTGGAGCTTTGAAGCCTCTGAACAGTGAAGGATGGCACAGTGAAGGTGTTCTAAAGAAGATCGTTAACCGGGTTTATGTCGACGAACTACTCGCCATTCTCGCGCTTCTCTCGAGTCACCAGAAGGCAATTCAGGACATGGGAGAGCTTGGAGCTGTTCCTAGCTTGCTGAGCTTAATCAGAGAGACCACTTGTGAACGAAACAAAGAGAATTGCATTGCAATCCTTCAGACTATCTGTCTGTATGACACAACCAGGTTGAAGGAGATAAAGGAAGAAGAGAACAGACATAAAACAATCTCTGAGCTTGGACAAAATGGAACTTCAAGGGCTAAGAGGAAGGCTGCTGGAATTCTTGAGAGACTAAACAGGGTTGTTAATATTACACACACGGCATAA 1128 0.4663 MAKPGVLESDPTVTAKGMELKKELQRLVKSIVEDEDHYGIETIDTTMETLSLLKQLKLSKRSTTTTSSSSSPSLKLRHKTGLNCPEEFKCPLSKQLMRDPIIVASGQTDDRTFIQKWLKDGNRTCPRTQLKAAAKELRILTKEMPCFRVFFGDFLGAIPKLLKPICGSHSLGNVHPDLQEDFITTLLNISIHDNKKKLVAETPMVIPLLMRALRSGTITTRSNAAAALFTLSALDSNKELIGKSGALKPLNSEGWHSEGVLKKIVNRVYVDELLAILALLSSHQKAIQDMGELGAVPSLLSLIRETTCERNKENCIAILQTICLYDTTRLKEIKEEENRHKTISELGQNGTSRAKRKAAGILERLNRVVNITHTA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0324 375 ProSiteProfiles U-box domain profile. 83 161 IPR003613 GO:0004842|GO:0016567
Lele39g0324 375 SUPERFAMILY RING/U-box 82 137 - -
Lele39g0324 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 141 IPR013083 -
Lele39g0324 375 Gene3D - 254 370 IPR011989 -
Lele39g0324 375 SMART Ubox_2 87 144 IPR003613 GO:0004842|GO:0016567
Lele39g0324 375 SUPERFAMILY ARM repeat 130 365 IPR016024 -
Lele39g0324 375 Pfam U-box domain 85 137 IPR003613 GO:0004842|GO:0016567
Lele39g0324 375 FunFam RING-type E3 ubiquitin transferase 270 371 - -
Lele39g0324 375 CDD RING-Ubox_PUB 88 129 IPR045210 -
Lele39g0324 375 PANTHER U BOX DOMAIN-CONTAINING 46 129 - -
Lele39g0324 375 Gene3D - 155 252 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0324 Lele-ChrLele39 2291304 2294318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0324 131 375 U-box Gene Family AT3G07360 53.763 1.99e-85 260