Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0317 ATGGTGGACCCAATTATTCCAGTGCGTATTTCCAGGGATTCCATGCATAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGCCGTCAACCAGCAAACACTAAACTTTCGAGTAACAAGACAGTCAGGAGAATTCGTGTTAGAGGTGGGAATGTGAAATGGAGGGCTTTACGATTGGATACAGGAAACTATTCATGGGGTAGTGAAGCCGTGACTCGCAAAACACGGATATTAGATGTGGTGTACAATGCCTCAAACAATGAGCTTGTGCGAACTCAAACCCTTGTGAAGAGTGCCATTGTTCAGGTCGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAGCACTATGGTGTTGATATCGGTAGGAAGAAGAAAACAGCTGCCAAGAAGGATTCCGCCGAGGAGGGTGAAACTGCTGCTGTTGAAGAGACAAAGAAAAGTAATCATGTGCTTAGAAAACTAGAGAAGCGCCAGAAAGATCGAAACCTTGATCCCCACATTGAAGAGCAATTTGGTGGCGGGCGATTGTTGGCTTGCATTTCTTCTCGACCTGGGCAATGTGGCAGAGCTGATGGCTACATATTGGAAGGCAAGGAGTTGGAGTTTTACATGAAGAAGCTCCAGAGGAAGAAGGGAAAGGGCGCTGGTGCTGCTTGA 684 0.4737 MVDPIIPVRISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAKKDSAEEGETAAVEETKKSNHVLRKLEKRQKDRNLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0317 227 Gene3D Ribosomal protein S8e, subdomain 115 183 IPR042563 -
Lele39g0317 227 ProSitePatterns Ribosomal protein S8e signature. 18 37 IPR018283 GO:0003735|GO:0005840|GO:0006412
Lele39g0317 227 PANTHER 40S RIBOSOMAL PROTEIN S8 9 222 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lele39g0317 227 FunFam 40S ribosomal protein S8 116 183 - -
Lele39g0317 227 CDD Ribosomal_S8e_like 12 204 - -
Lele39g0317 227 FunFam 40S ribosomal protein S8 169 222 - -
Lele39g0317 227 FunFam 40S ribosomal protein S8 39 168 - -
Lele39g0317 227 Pfam Ribosomal protein S8e 12 204 IPR022309 -
Lele39g0317 227 Gene3D - 34 220 - -
Lele39g0317 227 TIGRFAM eS8: ribosomal protein eS8 10 206 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0317 Lele-ChrLele39 2201970 2206244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0317 10 227 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.862 1.00e-126 355