Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0303 ATGGTTAGCTTTACCAATTATCTTGCCCTAGGGGAATTCGATCCTCTCACGGACTCGCAACTCAGTCTCAGAAATCAGAAATCAGATTCAGAGTTCACGGCATCACGATTCAGTTCCGCGGCTTTCTTCTCTTCTTCATCTTCTTCTCTTTCCAGCAGCTCTCACCCCCCAGTCGTTCCTTCATCTCAGATTCATATTCGGATCACTGACAAAGTAAAACTTTTGATGGGTGTGTCATCTGGCTCCAATATCAACCAGCAATCTTCTTCTAAAATGCTACCTCCACGTCAGCAATCTCGTGCTGGAGGACTGCAAACTTCACTATCCCTAGTTTCTTCAGATCCTCGTCTCTCCCCTGAGGAACCTAGATCAAACTCTGACAATATTCGAGAATCTCCTACTGAAAGTGCTAGTTCACAAGAAACTTGGCCCGCTGCTGAAGCTACTGCAGGAAAGAAGATGGATAATGGGAAGGCTGAGAATGATTGCCCTGAGTGGTCAGTCATCCGTCGTGTTTCTAGTGCTGACAAAATCACTCTTCAGGACATAGGAAGAGAAAGGGTTGACATAATCTCTGAAAAGATGCATCATCTACCTGAAGAATTCTTAGAAGAGCTGAAGAACAGTCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGATTTCTTCACTTTGCAGAGGCTTGTTCAAAGTAGAACTGATTTAACAGCCAAGACATTGATTAGAGCGCATCGTGTGCAGCTTGAAATCCTTGTTGCTATTAATACTGGAATTCAGGCATTTTTGCATCCCAGCGTCAATCTTTCGCAAACTTCCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAAAACCATCTTCCTGCTGATGACTGTACCTGTGAAATTTGCACTGGCAGAAATGGTTTCTGCAATCTCTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGGTGTGATTTATGCTCTCATTGGACTCATACAGATTGTGCCATTCTTGATCAACTTATTTGCATGGGCCCTTCTGCGAAGAGTGGTGCAGGACCAAGTGAAATGTTTTTCAGGTGCCACGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCAGCATTGTGCGCCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCCCAGAGGGAGGAAAGTATTCTGGAAGTGTGATGATCTAAAGGAGAAAATGAAAAATGGAATAGTGGAACCAAACGCTGCCTGCAGCGCAATATTGATGTTTTTCCAAGAGCTTGAGGCAGATTCCTTGAAGAACCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGAAAAATGGAGGTGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGCATGGCTCTCGAGGCTTGTGATCGAGAATTAGCAGATAAGGCGAGGGAAGCAGCAGAACTCAAGATGGACAGGCAAAAGAAGAGATTACAGATAGAAGAACTGGAGAGAATTGTAAGGCTTAAAACTGCAGAGGCTGATATGTTCCAGCTCAAGGCCAATGAGGCTAAACGAGAGGCCGAGAGGCTTCAGAGAATTGCCTCCGCCAAATCGGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAAACAACGCTTAAGCGAGGCCGAAGCTGAGAAGCAATATCTCTATGAGAAGATCAAATTGCAGGAGAGTTCTCGTGCTTCGCAGAGTAGTAGTGGAGAACCATCTCAGATGCTGATGTATTCCAAAATCCATGATCTGCTCTTTAGTATACCTCCCAAGGCAGATAGTCAACCTAATGAGCGACAGCCATTCAGAACAAACCCATGA 1974 0.4433 MVSFTNYLALGEFDPLTDSQLSLRNQKSDSEFTASRFSSAAFFSSSSSSLSSSSHPPVVPSSQIHIRITDKVKLLMGVSSGSNINQQSSSKMLPPRQQSRAGGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSQETWPAAEATAGKKMDNGKAENDCPEWSVIRRVSSADKITLQDIGRERVDIISEKMHHLPEEFLEELKNSLRVILEGGNGSQHREDFFTLQRLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPSVNLSQTSLIEIFVYKRCRNIACQNHLPADDCTCEICTGRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAILDQLICMGPSAKSGAGPSEMFFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGRKVFWKCDDLKEKMKNGIVEPNAACSAILMFFQELEADSLKNLENGESGRMIAPQEACNRIAEVVQEAIRKMEVVADEKMRMFKKARMALEACDRELADKAREAAELKMDRQKKRLQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIASAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQSSSGEPSQMLMYSKIHDLLFSIPPKADSQPNERQPFRTNP 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0303 657 CDD PHD_OBE1_like 316 375 - -
Lele39g0303 657 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 25 637 IPR004082 -
Lele39g0303 657 SMART PHD_3 316 376 IPR001965 -
Lele39g0303 657 MobiDBLite consensus disorder prediction 81 114 - -
Lele39g0303 657 Pfam Coiled-coil region of Oberon 504 636 IPR032535 -
Lele39g0303 657 MobiDBLite consensus disorder prediction 81 161 - -
Lele39g0303 657 MobiDBLite consensus disorder prediction 129 145 - -
Lele39g0303 657 PIRSF UCP025218 17 91 IPR004082 -
Lele39g0303 657 PIRSF UCP025218 76 642 IPR004082 -
Lele39g0303 657 Pfam PHD - plant homeodomain finger protein 286 409 IPR032881 -
Lele39g0303 657 MobiDBLite consensus disorder prediction 638 657 - -
Lele39g0303 657 Coils Coil 510 579 - -
Lele39g0303 657 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 396 415 IPR004082 -
Lele39g0303 657 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 194 216 IPR004082 -
Lele39g0303 657 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 277 298 IPR004082 -
Lele39g0303 657 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 323 343 IPR004082 -
Lele39g0303 657 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 251 266 IPR004082 -
Lele39g0303 657 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 578 600 IPR004082 -
Lele39g0303 657 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 236 251 IPR004082 -
Lele39g0303 657 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 539 559 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0303 Lele-ChrLele39 2076207 2079001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0303 286 388 PHD Gene Family AT5G57380 31.731 3.02e-08 55.1