Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele39g0287 | ATGCCATTAGCAGATAGCCATCGAGAATCATCGCTAGCCGGATTAACCCTCGACGATGTGTTAGCCAACCGAGCCGCCGCGTCGAGACATCAGCTCACAAACAACCGTCGAACCCTGCTTGACATCATCCGTGAAGACGAGTCCTCCAAAAACGATCGCAAATCTTGGAAAGCCTTCAAAGACAAGCTTCGGCTCAAACGCACCGGATCTGTTTGGACATCCTCCGTCCTTATTCCAGCTTCGGATATCCCTATCTCTATCCCTATCCCTGTCCGGAATAACAGAAACCTTTACACACAGTTCCCCTGTCGTAGCTCCGTCCGAATCCTTACATTCCCCCCAGTGGACGAGACGACTTACCCCATGGCTGATCCCACCGAAGAAACCATCAAGAGTTCCAACCTCGCCACCATCTCGCGCCAGAGATCCACGCGCCAGGTCGCGGATTCCTTTTTCGTCGACGATAAACTCAAGCCTCAGATGTCCCGGCCGAACTCCGCACGTCTGGCGGCGGCTGTGAGAGCTGATTCCATCCGGAGAGAGCGCGTGGTGACATTTCGTGATCCTGACAGCGATGACGACGAGGATGGAGACGGCCACCGCCAGCCGAAGGAGGAGAGGCAGATGTCTGCCAGGGAAGCTGTGGCAGCACAGGAAGCGGCGGAGGCGGCGGCGATGGCGGAGGATGATGAAGAGGAGGAAGATGAAGACGAGGAACCGTTCGGGGGTGGGGGAGGCGGGGTGACAATGTCGCTGATGGACTTGTTGGAGGAGACAGATCGGCAAATGGGGCTCGAAGGATCGACGTACAGAATGGAAGACGACTACGATGAGGATTTTGATGAGGATGAAGACGACGAAGAAGAAGGTGAGGAGCACGATTGCTGCGTGTGCATGGTGAAGCATAGAGGTGCGGCTTTTGTGCCTTGTAGGCACTCGTTTTGCAGAATGTGTTCAAGGGAGCTCACTGTGAGCAAGGGAAATTGTCCTCTCTGCAACAATTTCATCTTGGAGATTCTTGAGGTTTTCTGA | 1032 | 0.5455 | MPLADSHRESSLAGLTLDDVLANRAAASRHQLTNNRRTLLDIIREDESSKNDRKSWKAFKDKLRLKRTGSVWTSSVLIPASDIPISIPIPVRNNRNLYTQFPCRSSVRILTFPPVDETTYPMADPTEETIKSSNLATISRQRSTRQVADSFFVDDKLKPQMSRPNSARLAAAVRADSIRRERVVTFRDPDSDDDEDGDGHRQPKEERQMSAREAVAAQEAAEAAAMAEDDEEEEDEDEEPFGGGGGGVTMSLMDLLEETDRQMGLEGSTYRMEDDYDEDFDEDEDDEEEGEEHDCCVCMVKHRGAAFVPCRHSFCRMCSRELTVSKGNCPLCNNFILEILEVF | 343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele39g0287 | 343 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 270 | 343 | IPR013083 | - | |
| Lele39g0287 | 343 | Pfam | Zinc finger, C3HC4 type (RING finger) | 292 | 336 | - | - | |
| Lele39g0287 | 343 | SMART | ring_2 | 295 | 332 | IPR001841 | - | |
| Lele39g0287 | 343 | MobiDBLite | consensus disorder prediction | 224 | 241 | - | - | |
| Lele39g0287 | 343 | CDD | RING-HC | 295 | 332 | - | - | |
| Lele39g0287 | 343 | MobiDBLite | consensus disorder prediction | 272 | 288 | - | - | |
| Lele39g0287 | 343 | MobiDBLite | consensus disorder prediction | 182 | 250 | - | - | |
| Lele39g0287 | 343 | MobiDBLite | consensus disorder prediction | 265 | 288 | - | - | |
| Lele39g0287 | 343 | PANTHER | OS01G0917900 PROTEIN | 8 | 343 | - | - | |
| Lele39g0287 | 343 | ProSiteProfiles | Zinc finger RING-type profile. | 295 | 333 | IPR001841 | - | |
| Lele39g0287 | 343 | SUPERFAMILY | RING/U-box | 294 | 339 | - | - | |
| Lele39g0287 | 343 | MobiDBLite | consensus disorder prediction | 182 | 212 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele39g0287 | Lele-ChrLele39 | 1986785 | 1987816 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele39g0287 | 8 | 343 | C3H Transcription Factor Family | AT3G07120 | 36.939 | 3.25e-52 | 174 |