Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0285 ATGAAACGCCCGATCGATGACATCGTTGTGCCCTTGGCTTCGTCGGCTTCTTCCTCCGCTGCCGCTGCACCTCCGAAGCCGGTGTTCTTAACGAAGGCTCAGCGTGAAGAATTGGCTCTTAAGCGGCGCCAAGAAGAAATTGCCGAACAAAGACGCCATCAGGAACAGCTGCTTTCTCGGAACCGCCCATCCGACCCAAACTCCGATTCTAAACCCTCCGATTCCGACCGACGTGACCGTGACCGGGACCGGGACCGGGACCGGTACCGTGAGCGCGACCGCGATCGGGACCGGGATAGAGAGCGGGAGCGAGACAGAGACCGTGAGCGGGAGCGGGAGCGAGATAGGGCTCGCGATCGGGACCGTGAAACAGAACGAAGGAATCGCGAGAGGGAGCGTGAAGAGGAGGCTAAGGCTCGTGAGCGTGCTCGGAATGATAAATTGCAAGAGCGGGAGCGGGACAAAGAGCTTGAAGCGATCAAGGAGCAGTATCTTGGTTCGAAGAAGCCTAAGAAGCGGGTTATCAAACCCAGTGAGAAGTTTCGTTTTTCCTTCGATTGGGAGAATACGGAGGATACTTCTCGTGACATGAACATTCTCTACCAGAACCCTCACGAAGCGCAGCTTCTCTTCGGTCGTGGCTTTCGTGCTGGCATGGACCGGCGTGAGCAGAAGAAGCTTGCTGCTAAGAATGAGAAGGAGATGCGCGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAGCCCGAAGAGGCCGTTGCACAACGGCGGAAGGAGGCTGCTGCTGACCTCTATGACACCTTTGACATGAGAGTTGACCGCCACTGGAGCGAGAAGAAGCTTGATGAGATGACTGAGAGGGATTGGCGTATATTTAGGGAGGATTTCAACATTTCCTATAAGGGTTCTAAAATTCCTCGTCCAATGCGTAGCTGGGTTGAGAGTAAGTTGAGTCCTGAGTTATTGAAGGCGGTTGAGAAGGCTGGGTACAAGACCCCTTCTCCCATTCAGATGGCTTCCATTCCTCTTGGCCTTCAGCAGCGTGATGTAATTGGCATTGCCGAGACAGGTTCAGGTAAGACTGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCCATAAGTGAAGAGAATGAAGCTGAGGGTCCCTATGCTGTCGTCATGGCACCTACACGTGAACTTGCACAGCAGATTGAGGATGAGACCGTGAAGTTTGCCCAGTATCTTGGGATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAAGATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCTGGTCGATTGATTGATTGCTTGGAGAGGCGTTATGCTGTCCTAAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTTATGGGTGTCCTGGATGCAATGCCCTCCAGCAATATGAAGCCAGAAAATGAAGATGAAGAACTTGATGAGAAGAGGATTTACAGAACCACTTATATGTTCAGTGCCACCATGCCTCCTGCTGTTGAGCGGCTTGCTAGGAAATACTTGAGGAACCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACTGATTTGATCAGCCAGCATGTGATTATGATGAAGGAATCTGAAAAGTTTTTCAAACTGCAACGGCTGCTTGATGAACTTAATGACAAGACAGCAATTGTATTTGTTAACACTAAGAAAAATGCTGATATGGTTGCAAAGAATTTAGACAAGGAAGGCTACCGGGTAACCACTTTGCATGGTGGCAAGTCACAGGAGCAGAGAGAGATAAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAGATGTACACACATCGTATTGGACGTACTGGTCGTGCTGGGAAGACCGGTGTTGCTACAACGTTCCTGACTCTTCAAGACTCCGATGTCTTTTATGACCTCAAACAAATGCTTATACAGAGTAATAGTCCTGTTCCTCCTGAATTGGCTAGACATGAGGCTTCAAAATTCAAGCCAGGAGCCATTCCCGATAGACCACCTAGACGAAATGACACTGTATTTGCACATTGA 2193 0.4934 MKRPIDDIVVPLASSASSSAAAAPPKPVFLTKAQREELALKRRQEEIAEQRRHQEQLLSRNRPSDPNSDSKPSDSDRRDRDRDRDRDRYRERDRDRDRDRERERDRDRERERERDRARDRDRETERRNREREREEEAKARERARNDKLQERERDKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAVAQRRKEAAADLYDTFDMRVDRHWSEKKLDEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSPELLKAVEKAGYKTPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNMKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFFKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGAIPDRPPRRNDTVFAH 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0285 730 Coils Coil 114 158 - -
Lele39g0285 730 MobiDBLite consensus disorder prediction 41 159 - -
Lele39g0285 730 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 465 473 IPR000629 -
Lele39g0285 730 CDD DEADc_DDX23 321 537 - -
Lele39g0285 730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 563 707 IPR001650 -
Lele39g0285 730 FunFam probable ATP-dependent RNA helicase DDX23 271 540 - -
Lele39g0285 730 MobiDBLite consensus disorder prediction 41 59 - -
Lele39g0285 730 SMART helicmild6 587 668 IPR001650 -
Lele39g0285 730 CDD SF2_C_DEAD 548 677 - -
Lele39g0285 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 689 IPR027417 -
Lele39g0285 730 Coils Coil 30 53 - -
Lele39g0285 730 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 310 338 IPR014014 GO:0003724
Lele39g0285 730 MobiDBLite consensus disorder prediction 705 730 - -
Lele39g0285 730 Gene3D - 271 540 IPR027417 -
Lele39g0285 730 Gene3D - 541 727 IPR027417 -
Lele39g0285 730 MobiDBLite consensus disorder prediction 67 159 - -
Lele39g0285 730 MobiDBLite consensus disorder prediction 1 28 - -
Lele39g0285 730 FunFam probable ATP-dependent RNA helicase DDX23 541 729 - -
Lele39g0285 730 Pfam DEAD/DEAH box helicase 335 525 IPR011545 GO:0003676|GO:0005524
Lele39g0285 730 Pfam Helicase conserved C-terminal domain 563 668 IPR001650 -
Lele39g0285 730 MobiDBLite consensus disorder prediction 698 730 - -
Lele39g0285 730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 341 536 IPR014001 -
Lele39g0285 730 Coils Coil 222 248 - -
Lele39g0285 730 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 239 707 - -
Lele39g0285 730 MobiDBLite consensus disorder prediction 228 253 - -
Lele39g0285 730 SMART ultradead3 329 551 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0285 Lele-ChrLele39 1940548 1942740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0285 311 704 Eukaryotic Initiation Factors Gene Family AT1G72730 32.911 4.54e-61 209