Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0272 ATGGCCTTGCAGGGAACGGAGAACGCATACGAAGATACAAATCTTGCCGACAATGAACAAGAAGAATTCTCCGAATCCTTTGTTTGCTGCGTTTGTCTGGATCTATTATACAAGCCTATTGTGCTGTCTTGTGGTCACATATCCTGTTTTTGGTGTGTCCATCAGTCAATGAACCCCCTTTGTGAGTCTCATTGTCCAATTTGTCGGCATCCATATTATCACTTTCCAACTGTCTGTTGGATGCTTCACTTCATGCTTCTGAAGATGTATCCTGTTGCCTACAAGAGAAGGGAAATTCAAACTCTTGAGGAAGAAAAGAAAGGGGATTGCTACTCTCCTCAATTTGATGATGATAATCTCGTATCAGAAGTTAAGTTTGATCCTCCAAGTACTTCATCTTCCTGCTATGCTGGAAATCTGGTTTCCAACCCTCAGAATCCAGGACTTGCTGCAAGTATGGAGCAATCAGGGTCTGAAACTCAAAAGCAACATAAGGGTACCGTCTGTTCTAAAGATGTTTTTGGTGTGACTGCTGAAGCTTTTGGGACTCCTTCTCAAGTAAAAATGCTGCCTCAGAACGATAGGCAACAGAAGATATCAGTTGCAGATGTGATGTGTTCAACATGCAAGCAGCTGCTTTTTCATCCTGTTGTTCTTAACTGTGGTCATGTATACTGTGAGTCTTGTATCAAGAACTCAGCTGATGAGATGCTTAGATGCCAAATTTGTCAACTTCCACATCCAAGAGGATTTCCAAGAGTTTGTTTGGAGCTTGATCACTTTATAAAGGAACAATTTCCTGAGGAATATGAAAAGCAGAGAGATGCTATGCAACTTAGGCATATCAATGATAAACCTGAGACCTCTTTTTGTTCGCTGAATAAGGGTGGAGGAGGAAAAGCACCATGGTGGTCTGATCGTCACTTGAAAGTACATGTTGGAGTTGGCTGTGATTTTTGTGGGATGTATCCAATTGTTGGGGATAGATACAGATGTAAAGACTGTAAGGAGAAGATTGGTTTCGATCTTTGTGCCGATTGTTATAAAATTCACAGCAAGATTCCAGGTCGGTTCAATCAGCAGCACACTCCAGATCATGAGTTTGAGCTTAAACAAATCAACACTCTCCATGACATAATGAGGCTGGTTACTGGACAGTTAGGAGATGATTCCATTGAGAATTTGCCACTGGAAAGCATAGAGTTTAGACCTGAAGATCCCGATTTAGATGTTGATGGTGATGGAGAAGATACCCAGAATGACTCTGAAGGCAATGACTGA 1281 0.4161 MALQGTENAYEDTNLADNEQEEFSESFVCCVCLDLLYKPIVLSCGHISCFWCVHQSMNPLCESHCPICRHPYYHFPTVCWMLHFMLLKMYPVAYKRREIQTLEEEKKGDCYSPQFDDDNLVSEVKFDPPSTSSSCYAGNLVSNPQNPGLAASMEQSGSETQKQHKGTVCSKDVFGVTAEAFGTPSQVKMLPQNDRQQKISVADVMCSTCKQLLFHPVVLNCGHVYCESCIKNSADEMLRCQICQLPHPRGFPRVCLELDHFIKEQFPEEYEKQRDAMQLRHINDKPETSFCSLNKGGGGKAPWWSDRHLKVHVGVGCDFCGMYPIVGDRYRCKDCKEKIGFDLCADCYKIHSKIPGRFNQQHTPDHEFELKQINTLHDIMRLVTGQLGDDSIENLPLESIEFRPEDPDLDVDGDGEDTQNDSEGND 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0272 426 FunFam E3 ubiquitin-protein ligase PRT1 306 371 - -
Lele39g0272 426 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
Lele39g0272 426 MobiDBLite consensus disorder prediction 402 426 - -
Lele39g0272 426 FunFam E3 ubiquitin-protein ligase PRT1 20 115 - -
Lele39g0272 426 Pfam Zinc finger, ZZ type 312 350 IPR000433 GO:0008270
Lele39g0272 426 FunFam E3 ubiquitin-protein ligase PRT1 193 288 - -
Lele39g0272 426 SMART zz_5 311 357 IPR000433 GO:0008270
Lele39g0272 426 Pfam RING-type zinc-finger 206 239 IPR027370 -
Lele39g0272 426 CDD RING-HC 29 68 - -
Lele39g0272 426 MobiDBLite consensus disorder prediction 407 426 - -
Lele39g0272 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 96 IPR013083 -
Lele39g0272 426 SUPERFAMILY RING/U-box 18 78 - -
Lele39g0272 426 SUPERFAMILY RING/U-box 306 369 - -
Lele39g0272 426 ProSiteProfiles Zinc finger RING-type profile. 206 244 IPR001841 -
Lele39g0272 426 MobiDBLite consensus disorder prediction 147 166 - -
Lele39g0272 426 PANTHER UNCHARACTERIZED 19 374 - -
Lele39g0272 426 ProSiteProfiles Zinc finger ZZ-type profile. 312 376 IPR000433 GO:0008270
Lele39g0272 426 SUPERFAMILY RING/U-box 203 266 - -
Lele39g0272 426 MobiDBLite consensus disorder prediction 147 164 - -
Lele39g0272 426 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Lele39g0272 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 291 IPR013083 -
Lele39g0272 426 SMART ring_2 29 68 IPR001841 -
Lele39g0272 426 SMART ring_2 206 243 IPR001841 -
Lele39g0272 426 Gene3D - 306 371 IPR043145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0272 Lele-ChrLele39 1871195 1876825 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0272 14 69 C3H Transcription Factor Family AT1G74990 38.596 1.03e-08 52.0