LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele39g0271	ATGGAGCTAAAACGAGCAACAAAAGGATTCAAAGAAGAAATTGGAAGAGGCTCAGGTGGAATAGTGTACAAAGGAGTATTGCCTGATCAAAGAATTGCAGCAATTAAGAAGCTGAACAATAACATCTTGGGAGCCAAACAAGAAGAAGAAGGAGAATTCCTAGCTGAAGTGAGCATAATCGGCAGGCTTAACCACATGAACTTGATCGAAATGTGGGGTTATTGTGCTGAAGGAAAGCACAGGCTATTAGTGTATGAGTTCATGGAGAAAGGTTCTTTAGCTGAAAATCTGAGGTCAAACACTTTGGATTGGGCCAAAAGATTCAACATCGCTCTTGGAACTGCAAGAGTTCTAGCCTACTTACACGAAGAATGCTTGGAGTGGATTCTTCATTGTGACATAAAGCCTGAAAATATTCTTCTGGATTCAAATTACCAACCCAAGGTATCAGATTTCGGCTTATCTAAGCTTCAAAATCGTAATGACCAAAACTTTGAAACCTTCTCAGCTATAAGAGGAACGAGGGGATACATGGCGCCAGAGTGGGTTTTCAACCTTCCAATAACGTCAAAAGTGGATGTGTATAGCTATGGGATTGTTGTGTTGGAGATGATAACAGGAAGGAGTCCAACGAAGATGGGAATTCAGAATGAGGAAGAAGAGGGACATGATGGGAGGCTGGTGAAGTGGGTGAGAGAGAAGATGAGGAAGAAAACGACGTCGTCGGGGTGTTGGGTGGAGCAGATAATTGATGCGGCCATTTTATCAGAGCATGAGGTTCAGAAGCAAAAGATGGAGACATTGGCTAAAGTGGCATTGAAGTGTGTGGAAGAAGACAAGGATGCGAGGCCCAGCATGAGCCACGTTGTTGAGATGCTTCAGAGCCATGAAGATGATTATGCTTCTTAG	909	0.4312	MELKRATKGFKEEIGRGSGGIVYKGVLPDQRIAAIKKLNNNILGAKQEEEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEFMEKGSLAENLRSNTLDWAKRFNIALGTARVLAYLHEECLEWILHCDIKPENILLDSNYQPKVSDFGLSKLQNRNDQNFETFSAIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGRSPTKMGIQNEEEEGHDGRLVKWVREKMRKKTTSSGCWVEQIIDAAILSEHEVQKQKMETLAKVALKCVEEDKDARPSMSHVVEMLQSHEDDYAS	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele39g0271	302	CDD	STKc_IRAK	14	294	-	-
	Lele39g0271	302	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	129	141	IPR008271	GO:0004672\|GO:0006468
	Lele39g0271	302	Pfam	Protein kinase domain	11	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele39g0271	302	SUPERFAMILY	Protein kinase-like (PK-like)	4	294	IPR011009	-
	Lele39g0271	302	SMART	serkin_6	8	293	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele39g0271	302	Gene3D	Phosphorylase Kinase; domain 1	1	87	-	-
	Lele39g0271	302	ProSitePatterns	Protein kinases ATP-binding region signature.	14	37	IPR017441	GO:0005524
	Lele39g0271	302	ProSiteProfiles	Protein kinase domain profile.	8	301	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele39g0271	302	FunFam	Serine/threonine-protein kinase	88	301	-	-
	Lele39g0271	302	Gene3D	Transferase(Phosphotransferase) domain 1	88	301	-	-
	Lele39g0271	302	PANTHER	OS07G0415500 PROTEIN	2	297	-	-
	Lele39g0271	302	FunFam	S-receptor-like serine/threonine-protein kinase	1	87	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele39g0271	Lele-ChrLele39	1864103	1865484	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele39g0271	2	294	Receptor kinase-like Gene Family	AT5G20050	37.908	4.64e-61	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Lele39g0271		Pkinase	2.7e-55	CL0016