Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0258 ATGGTCTCGATCCAACAGGAAGAGACTGAGGCTGAAGAGAAAGTCGTGAATCCCTCTGAATCTACGAAAACAAAATCGTCAGCCTCCTCCAATGTCGATGCCCATAAAGAAGCTTCTGATGGCTTTGAAACCGCCAGCGACACCGAGCTCGGCAGCGACGTAGAGGATACGCATAAAGAACGGGAACAACAACATCAACATCAGGAGCTGGGGATTCCTCCGGGAGCTGATTCTTCCGAAGAGGCATCACACGACGAGGAATTGAAACAGAAAGCATTGGCTCAAGCGAATGATGCAAAATTAGAAGGGAATAAGCTCTTTGGGGATGGGCAATTTGAGGAGGCATTGTCAAAGTATGAACTTGCTTTACAAATTGCTCCAGATATGCCTTCATCTGTTGAAGTACGCTCAATATGCCATTCAAATCGTGCTGTATGCTTTATGAAATTGGGGAAATATGAGGACACAATCAAAGAGTGCACTAAGGCATTGGAACTTAATCCTGCATATCTGAAAGCTCTGTCGAGAAGAGGCGAGGCACATGAGAAGCTTGAACATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGAACCTTCAAATGATCAAGCTAGAAGAACCATTCGGAGATTGGAACCCCTGGCTGCAGAAAAGCGTGAAAAGATGAAGGAAGAAATGATTGGTAAACTGAAAGAAATGGGTAATTCTGTGTTGGGACGCTTTGGGATGAGCGTTGACAACTTCAAAGCTGTTCAAGATCCAAACACTGGTTCCTATTCCATCTCATTCCAACGCTAA 807 0.4411 MVSIQQEETEAEEKVVNPSESTKTKSSASSNVDAHKEASDGFETASDTELGSDVEDTHKEREQQHQHQELGIPPGADSSEEASHDEELKQKALAQANDAKLEGNKLFGDGQFEEALSKYELALQIAPDMPSSVEVRSICHSNRAVCFMKLGKYEDTIKECTKALELNPAYLKALSRRGEAHEKLEHFEEAIADMKKILEIEPSNDQARRTIRRLEPLAAEKREKMKEEMIGKLKEMGNSVLGRFGMSVDNFKAVQDPNTGSYSISFQR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0258 268 Pfam Tetratricopeptide repeat 172 204 IPR013105 -
Lele39g0258 268 Pfam Tetratricopeptide repeat 139 169 IPR001440 GO:0005515
Lele39g0258 268 SUPERFAMILY TPR-like 95 214 IPR011990 GO:0005515
Lele39g0258 268 MobiDBLite consensus disorder prediction 1 88 - -
Lele39g0258 268 ProSiteProfiles TPR repeat profile. 171 204 IPR019734 GO:0005515
Lele39g0258 268 SMART tpr_5 171 204 IPR019734 GO:0005515
Lele39g0258 268 SMART tpr_5 137 170 IPR019734 GO:0005515
Lele39g0258 268 SMART tpr_5 96 129 IPR019734 GO:0005515
Lele39g0258 268 ProSiteProfiles TPR repeat profile. 96 129 IPR019734 GO:0005515
Lele39g0258 268 MobiDBLite consensus disorder prediction 51 67 - -
Lele39g0258 268 MobiDBLite consensus disorder prediction 20 34 - -
Lele39g0258 268 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 20 268 - -
Lele39g0258 268 Gene3D Tetratricopeptide repeat domain 57 235 IPR011990 GO:0005515
Lele39g0258 268 ProSiteProfiles TPR repeat profile. 137 170 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0258 Lele-ChrLele39 1747587 1750680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0258 67 227 Calmodulin-binding Proteins AT3G25230 33.889 1.55e-14 71.2