Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0257 ATGGAGGTTTCTCCGAAATGGTCGTTCATCGTTTTCGTTCTGAGTATGGCGCTGCTTGTATCTAGCGCCAAGCCATTGAATGGGGATGATAATGAGAAAGGCCGTCTTGTACAGTCAAGGAATGTAGAAACAGAGAAGTTGCAGAGTTTGAAGAATTCATCAATGGCGGATAGGGTAGATTATGCTCTCAATGAACACGCAGTGGATGATCCAGAGGAGATAGCTTCCATGGTTGATATGACCATTCGCAATCATACTGAGAGAAGGAATCTGGGTTTCTTCTCATGTGTGACTGGGAATCCAATTGATGACTGCTGGCGCTGTGACAAACTCTGGCACAGACGGAGAAAGCGTTTGGCCAATTGTGGAATTGGTTTTGGACGTAATGCCATTGGTGGTCGTGATGGAAGGTTCTATATTGTGACTGATCCAAGAGATGACGACCCTGTTAACCCAAGACCAGGTACCCTGCGCCACGCAGTTATTCAAGACAGACCTCTGTGGATTGTGTTCAAGAGGGACATGGTTATCACTTTAAAACAAGAACTTATCATGAACAGCTTCAAGACCATAGATGGTCGTGGAGTGAATGTGCACATTGCTTATGGGGCTTGCATTACTATACAGTTCGTCACCAATGTCATCATCCATGGTTTACATATCCATGACTGCAAACGCACTGGTAATGCCATGGTTCGGAGCTCACCAACTCATTATGGTTGGAGAACTATGGCTGATGGAGATGGGATTTCCATCTTTGGTTCAAGTCACATTTGGATTGACCATAACTCACTGTCTAATTGCGCTGATGGCCTTATTGATGCAATTATGGGTTCCACTGCCGTTACCATTTCCAACAATTACTTCACCCACCACAATGAGGTTATGCTACTGGGTCACAGTGATTCATATGTAAGAGACAAGCAGATGCAAGTAACCATAGCCTACAATCATTTTGGGGAGGGTCTTATACAGAGAATGCCAAGGTGCAGACATGGGTACTTCCATGTGGTAAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTGATCCCACCATTAACAGCCAAGGCAACCGATACCTTGCCCCTCGAAACCGTTTTGCCAAGGAGGTGACTAAGAGAGTGGAAACAGACTCTAGGATATGGAGGCATTGGAATTGGAGATCAATGGGAGACCTTATGTTAAACGGAGCCTATTTCACTTCATCAGGAAGGGGGGCTGCAGCCAGTTATGCCAGAGCCTCCAGTTTAGGGGCTAAGGCTTCTTCTATGGTTGGTGTCATTACTTCTGGAGCTGGTGTTCTTACCTGCCGCAGGGGCTTCACCTGTTAA 1347 0.4588 MEVSPKWSFIVFVLSMALLVSSAKPLNGDDNEKGRLVQSRNVETEKLQSLKNSSMADRVDYALNEHAVDDPEEIASMVDMTIRNHTERRNLGFFSCVTGNPIDDCWRCDKLWHRRRKRLANCGIGFGRNAIGGRDGRFYIVTDPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFVTNVIIHGLHIHDCKRTGNAMVRSSPTHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAVTISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPRNRFAKEVTKRVETDSRIWRHWNWRSMGDLMLNGAYFTSSGRGAAASYARASSLGAKASSMVGVITSGAGVLTCRRGFTC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0257 448 SMART amb_all 174 371 IPR002022 -
Lele39g0257 448 PANTHER PECTATE LYASE 18-RELATED 67 445 IPR045032 GO:0030570
Lele39g0257 448 SUPERFAMILY Pectin lyase-like 77 443 IPR011050 -
Lele39g0257 448 FunFam Pectate lyase 99 441 - -
Lele39g0257 448 Pfam Pectate lyase 183 363 IPR002022 -
Lele39g0257 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Lele39g0257 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Lele39g0257 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Lele39g0257 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Lele39g0257 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Lele39g0257 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Lele39g0257 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Lele39g0257 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Lele39g0257 448 Gene3D - 99 441 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0257 Lele-ChrLele39 1734627 1738826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0257 39 448 Polysaccharide Lyase AT4G13710 77.751 0.0 687