Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0232 ATGGCCGAGGTGGAATCGGAGGAGTATTGCCAGGAAAATAAACAAACTGTTGCTGCTTCTAGCTCCTCTACATCTGAAAGCAGTGGCAGTGCTCTCCCCAGGTCTCCTGGAATATGTAGCCCAGCATCTACATCACCGTCTCATCGGAGAACTACTGGCCCTATAAGGCGTGCAAAGGGTGGTTGGACAGCAGAAGAGGATGAGACACTGAGGAATGCTGTTGCGATTTTCAAGGGAAAGAATTGGAAGAAAATAGCTGAGTTTTTCCCTGATAGATCAGAAGTGCAATGTCTTCACAGATGGCAAAAAGTTCTTAACCCAGAACTTGTTAAAGGGCCTTGGACTCAGGAGGAGGATGATAAAATTGTTGAACTAGTGTCAAAATATGGGCCTACAAAATGGTCAGTAATAGCCAAGTCCCTGCCTGGTCGTATAGGGAAGCAGTGTCGAGAGCGATGGCACAACCATCTTAATCCTGACATAAAGAAGGATGCCTGGACTTTGCCAGAGGAATTAGCCCTCATGAATGCTCATTGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTGCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCATTGAAGAAGAAGTTGGACTTTTATTTAACTACTGGACAACTTCCACCAGTTTCAAAGAATAGTCCAAAAGTTGATGTGGAAGACAAAATGATATGCTCTGCAACAGAAACAATTCTTGGTAGTTCAAATAAAGTATCAGATGCAGCTACTGAAACATCGTCAGAAACTACAGAGATTAATAACCAAGATGACAGTGGTAAGAATCACTCAAGGCATTTAACAACAGCAAGAGATGTTGGTGATTCCTTAAATGTTCTTGCAAATGAATCTGCTGATTCTGCCTGTATAGAGTGCAAGCCCAAATCCTCCAATTTAGATTTCAGCTGCAGCAACTCACAACCAATATCAAGAGACAATTTTGGAATAACTAGTGAACGAACACATGAGAAATCTGGACTCAATGGCAAGCTAGCAACCGTGCCTTGTATAAATAATGGTGAAATGAGTAGTAACAGGTTGATCACAAAACCTTCTCCACAGGAAGGTCCAACTTGTGGTTCTTTATGTTATAAGCCACTGCAGATGGAGAATTTGGTTCCTTTAGATTCTCTTTATTTAAATATCTTTTGTCTCCAAAATTACTACAGCCCTACCCCCATGATATCTCCTGCTGGTTTCTTCACTCCACCTTGTGTGAAGGGGCGTGAATTTTTCAAACAAACTCCTGAATCAATATTGAAAATGGCTGCTGAGACTTACCCAAATATCCCTGCCATATTGAGGAAGAGAAGGACTGGAGTCCAGACACAAGTCACTCCCAGTAAAGTTGTGAAAGTTGATGGAGAATCTCATGCTTCTATTGGTCAGCAGAGAAATAAGAATTATACTGATTCTGAGGTTGGGAGGTTCTCTGAGAGTCCAGCAAGCCTTGGCCATGGCAATGACCTTCCCAATAATAAAATTTTCAATGCATCTCCACCCTACCGTTTAAGATCCAAACGGACAACAGTTGTCAAGTCTGTGGAGAAACGACTTGAGCTTGCATTTGACCGAGAAAAGCACAACTGCATAAGTTGGTTAAAGGTGGGACTTGCAGTTAGACATTGGCTCTCAGAAGCGGTCAACTGA 1689 0.4227 MAEVESEEYCQENKQTVAASSSSTSESSGSALPRSPGICSPASTSPSHRRTTGPIRRAKGGWTAEEDETLRNAVAIFKGKNWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLPEELALMNAHCIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLTTGQLPPVSKNSPKVDVEDKMICSATETILGSSNKVSDAATETSSETTEINNQDDSGKNHSRHLTTARDVGDSLNVLANESADSACIECKPKSSNLDFSCSNSQPISRDNFGITSERTHEKSGLNGKLATVPCINNGEMSSNRLITKPSPQEGPTCGSLCYKPLQMENLVPLDSLYLNIFCLQNYYSPTPMISPAGFFTPPCVKGREFFKQTPESILKMAAETYPNIPAILRKRRTGVQTQVTPSKVVKVDGESHASIGQQRNKNYTDSEVGRFSESPASLGHGNDLPNNKIFNASPPYRLRSKRTTVVKSVEKRLELAFDREKHNCISWLKVGLAVRHWLSEAVN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0232 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Lele39g0232 562 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Lele39g0232 562 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Lele39g0232 562 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Lele39g0232 562 MobiDBLite consensus disorder prediction 1 64 - -
Lele39g0232 562 CDD SANT 113 157 IPR001005 -
Lele39g0232 562 MobiDBLite consensus disorder prediction 11 51 - -
Lele39g0232 562 MobiDBLite consensus disorder prediction 467 511 - -
Lele39g0232 562 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Lele39g0232 562 Gene3D - 58 110 - -
Lele39g0232 562 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Lele39g0232 562 Gene3D - 164 237 - -
Lele39g0232 562 FunFam Transcriptional activator Myb isoform A 111 163 - -
Lele39g0232 562 PANTHER MYB PROTEIN-RELATED 59 130 - -
Lele39g0232 562 Gene3D - 111 162 - -
Lele39g0232 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Lele39g0232 562 FunFam Transcriptional activator Myb isoform A 58 110 - -
Lele39g0232 562 MobiDBLite consensus disorder prediction 250 279 - -
Lele39g0232 562 CDD SANT 165 208 IPR001005 -
Lele39g0232 562 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Lele39g0232 562 SMART sant 162 210 IPR001005 -
Lele39g0232 562 SMART sant 110 159 IPR001005 -
Lele39g0232 562 SMART sant 58 107 IPR001005 -
Lele39g0232 562 MobiDBLite consensus disorder prediction 250 268 - -
Lele39g0232 562 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Lele39g0232 562 FunFam Transcription factor MYB3R-2 164 230 - -
Lele39g0232 562 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Lele39g0232 562 MobiDBLite consensus disorder prediction 472 490 - -
Lele39g0232 562 CDD SANT 62 105 IPR001005 -
Lele39g0232 562 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0232 Lele-ChrLele39 1560884 1565635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0232 49 541 MYB Transcription Factor Family AT5G02320 49.119 2.63e-133 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele39g0232 Myb_DNA-binding 2.6e-14 CL0123