Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0201 ATGGAGCAAGGTCAATTCTGGATGTGGACGAAGAGGAAATACTCTTTGAGCTCTTCTAATCTCATCACTTCATCAACAAAACCTTCTTCTTCTTCTTATGATGACTCTTCATGGGAAGAGCAAGCTTTTGCTGAAGACGCTTCTGGGCCTCTTGGTGGATGCATATGGCCTCCCAGATCATACACTTGCAGTTTCTGCAGAAGAGAGTTCAGATCAGCACAAGCTCTTGGAGGCCACATGAATGTTCATAGAAGAGACAGAGCCAGACTCAAGCAGCCTTCAAGCCCCCAAAACAATGAACTTCATCAAATTCCTAGTACTTCTTCGTTTATGGGTTTCCTATACCCTTATAATCAGAATTGCTCTACTGCTAACCCTAATTCTGTCCTTGTTGCTTCTTCACCTGCTGATAACATAATGGTTCCACCTTATAATTCTTCTTGTATTATTGCCCCATCACAAGTACATAAGGTGAATTCTTCTAATTATTCTCCTCTCTATTCTTCTTCTAAATCGAACTGCGCAGACTTATTGGCTGAAGCTGAGAAGATCACAGAGCTGTTGGATTGTGATGGGTGCGAGGACGATAATGGAAAATCTGATTTGGCTTTTAGTTTAAATTTGGTCGTGTGTAGAGGTATTGAAACAAAGGAGGAAGCTATTATTAGTTGCAAGAAGAGGAGAACTTCTGAAACTGCATCGATTCTTCCTCTCTTCCCAAATTCAAATTCTTCAGCTGAATTTAGCCCTAGCTCCAAACAAGAGCTAGATCTGGAGCTAAGGCTGGGTCAAAGCAAGCACAAGATTATACTTGACATTGTAATCGATGGTTCCAATAATATCGATTTTTCCTAG 855 0.4094 MEQGQFWMWTKRKYSLSSSNLITSSTKPSSSSYDDSSWEEQAFAEDASGPLGGCIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPQNNELHQIPSTSSFMGFLYPYNQNCSTANPNSVLVASSPADNIMVPPYNSSCIIAPSQVHKVNSSNYSPLYSSSKSNCADLLAEAEKITELLDCDGCEDDNGKSDLAFSLNLVVCRGIETKEEAIISCKKRRTSETASILPLFPNSNSSAEFSPSSKQELDLELRLGQSKHKIILDIVIDGSNNIDFS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0201 284 SMART c2h2final6 61 83 IPR013087 -
Lele39g0201 284 Pfam C2H2-type zinc finger 61 85 - -
Lele39g0201 284 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lele39g0201 284 Gene3D Classic Zinc Finger 58 110 - -
Lele39g0201 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Lele39g0201 284 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Lele39g0201 284 MobiDBLite consensus disorder prediction 77 101 - -
Lele39g0201 284 PANTHER OS07G0101800 PROTEIN 32 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0201 Lele-ChrLele39 1346234 1347397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0201 34 139 C2H2 Transcription Factor Family AT4G17810 50.926 1.07e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele39g0201 zf-C2H2_6 5.1e-06 CL0361