Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0152 ATGCTTCAGATTCGGCTTAGTAAGGTTCAATCCCCTGAAGGTTTAGCAGGGGTGAAGCCCTCACCTGTTGAGACTATTACGGTCACTTGTCCCGATCATCTAGTCCTTGCTGATCTTCCTGTAGCAAAGGGCATAGGTTCAGCCACTGCTACTTCATTGGTGAAGACTCTTGGTCGTAGATCTCGCCGCCAATGTGGTGACTGTGTCCATTTCTGTGTTTGTTGTGACTTCCCAATTGCAATCTATGGACGGCTGAGCCCTTGTGAGCATGCCTTCTGTCTTGATTGTGCTAGAAGTGATTCAATATGCTACCTGTGTGATGAACGAATCCAGAAAATTCAGACAATCAAAATGTTAGAAGGAATATTCATCTGTGCAGCTCCTCACTGTTTCAAGTCTTTCTTGAAAAAGTCAGAATTTGAAATGCATATCCAAGATGTACATGCTGACCTTCTCCGTCCCAATGTAGACAAAGAAGATGGAAACGAGTCAGAGACACATAATAGCGTTTGGCAATCTGCAATGTCGGATTCTTCTGCTCATGTTTCCCAAAGGCCTGTTTTCTCTCCTGGTTCAAATTCCCAGCTACACGATCGAGAAGACAAGACTGGTCAACAACCACTGAGAGACCAACCTTCAAGGTCGGCTCTGCAGCCAAAGCCACCTTTTGTTCAAGTTCAAAATCACTCTGCAGATCTCCAGCCTGGCCCTAATGGAGGTATTTCCCCGGGCTTCTATCAACAAAATTCTGACATGCAGCGACCTCCACAAGAACCTTCCCAGTTTACAGACCGGCATCGAGGAGTCACACCAGAGATACCACTCCCTGATTATCCATCCATGCATTCCTCCCAGACACCCAGTTTTGTAGTGCCGGTTAATGCTAACCCAATGTTGAATCCTCCTGTGCCATTCGGTTATCCTCCTTACCCGCCAAATGAGGGAGCTCCGCCATTTTATCCGAACCTGTATGACATGCGTCGGCAGGACTCGGCTTCTGAAGTAGGTGGAGACCAGAGTTCCTTACTTGGTTTTTCGCCAGGTGCCGTAGCGGGCTCTAATTTTCCAGCAAATTATCCCCAGTCCTTGAATGCAGGAATTGGTGGCCTACCTTTTGAACAAGGACATTGCGGTATGGCTATGGATCCACGTGATGCTAAAGGTATATTGGCACCACAGTCCATGCCCCTCCCACCTCCGCCGCCACTGCCATTGCCGCCCATGCCCCATCTGAACCAGAAATATTATTCCCGCGAGTTCGGACACAATGGACATGGTTATGGTTGGCAGCATGATAATCGTGAAGCCTTTGGTGGTCAGGACTAG 1326 0.4811 MLQIRLSKVQSPEGLAGVKPSPVETITVTCPDHLVLADLPVAKGIGSATATSLVKTLGRRSRRQCGDCVHFCVCCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDERIQKIQTIKMLEGIFICAAPHCFKSFLKKSEFEMHIQDVHADLLRPNVDKEDGNESETHNSVWQSAMSDSSAHVSQRPVFSPGSNSQLHDREDKTGQQPLRDQPSRSALQPKPPFVQVQNHSADLQPGPNGGISPGFYQQNSDMQRPPQEPSQFTDRHRGVTPEIPLPDYPSMHSSQTPSFVVPVNANPMLNPPVPFGYPPYPPNEGAPPFYPNLYDMRRQDSASEVGGDQSSLLGFSPGAVAGSNFPANYPQSLNAGIGGLPFEQGHCGMAMDPRDAKGILAPQSMPLPPPPPLPLPPMPHLNQKYYSREFGHNGHGYGWQHDNREAFGGQD 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0152 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
Lele39g0152 441 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Lele39g0152 441 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Lele39g0152 441 MobiDBLite consensus disorder prediction 166 194 - -
Lele39g0152 441 MobiDBLite consensus disorder prediction 422 441 - -
Lele39g0152 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
Lele39g0152 441 MobiDBLite consensus disorder prediction 154 274 - -
Lele39g0152 441 MobiDBLite consensus disorder prediction 208 259 - -
Lele39g0152 441 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 431 IPR040383 GO:0016567|GO:0061630
Lele39g0152 441 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0152 Lele-ChrLele39 1024207 1026113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0152 1 438 C2H2 Transcription Factor Family AT5G01160 44.595 2.87e-104 312