Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0141 ATGTCCATATGTATCGCCATCAGCAAAAGTGTATCATTTCCTTGTTTAATGAAATCCATATGTTTCCTTTTATATTTCTGCATGCTGATCAATTTAAGGGACTCTCTCTCTTTCTCACACACACTCACTTTGCAAGTCATAAATAACTCTTATTTATATCTGAGGAGAGAGTCCATTTCTCTAGCATCTGCTTTGGCATGCTTTCTTGCTGCTGCTGTGTACAATATATCTAGAACAATGAACAGGGGAATTGAAGTACTCTCTCCGCCCTCGTACCTCCAGAACTCTAATTGGCTGTTCCAGGAAGGCAAAGGAACTAGATGGACTGCAGAAGAGAACAAGCGATTTGAGAACGCTTTGGCTCTGTATGATAAGGATACACCAGATCGTTGGCTGAAGGTTGCTGCCATGATCCCAGGCAAGACTGTGGGTGATGTGATCAAACAGTACAGAGAACTGGAAGAAGATGTGAGTGTCATTGAGGCAGGGCTCTTCCCAATCCCTGGTTACAGTAATAGTTCTTTCACATTGGAGTGGGTCAATGGGCAAGGTTTTGATGGCTTCAACCAATTTTATACTTCTGGTGGTAAAAGGGGTTCCCCAACCAGGCCTTCTGAGCATGAAAGGAAGAAAGGAGTTCCTTGGACTGAAGAGGAGCACAGGCAATTTCTGATGGGGTTGAAGAAATATGGAAAAGGGGACTGGAGAAACATCTCTCGCAATTTTGTGACCACAAGGACGCCTACTCAGGTTGCAAGCCATGCTCAGAAGTATTTCATCAGGCAGCTTCCAGGAGGGAAAGATAAGAGGAGATCCAGTATCCATGATATCACAGTGGTCAATCTCCAAGAAACCAAACCTCCTTCATCAGACAGTATCAGATCGGCTTCTTCAAATCATCCTACAAAGGTTGTAAATCCACACCAGAATCAGAAATTAGTCAGCATGATTAAACAGGAATATGACATGCCAACGGTTTTCAATCCTACAAATGGGAACATGTTCTTGGCACCGATTTATGGATTTTCTTCTCATGGATCGAAACCACTGCAGGAGCAGTGTATGCTCAGAGGTACTCTCCATGGATTTGATCATGGACCTTATGATACTATTCTTCAAATGCAATCAATGCAGCATCAGTGA 1143 0.4304 MSICIAISKSVSFPCLMKSICFLLYFCMLINLRDSLSFSHTLTLQVINNSYLYLRRESISLASALACFLAAAVYNISRTMNRGIEVLSPPSYLQNSNWLFQEGKGTRWTAEENKRFENALALYDKDTPDRWLKVAAMIPGKTVGDVIKQYRELEEDVSVIEAGLFPIPGYSNSSFTLEWVNGQGFDGFNQFYTSGGKRGSPTRPSEHERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLPGGKDKRRSSIHDITVVNLQETKPPSSDSIRSASSNHPTKVVNPHQNQKLVSMIKQEYDMPTVFNPTNGNMFLAPIYGFSSHGSKPLQEQCMLRGTLHGFDHGPYDTILQMQSMQHQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0141 380 FunFam transcription factor MYB1R1 213 264 - -
Lele39g0141 380 Gene3D - 100 167 - -
Lele39g0141 380 MobiDBLite consensus disorder prediction 201 215 - -
Lele39g0141 380 FunFam Transcription factor SRM1 100 167 - -
Lele39g0141 380 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 262 IPR006447 GO:0003677
Lele39g0141 380 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 102 322 IPR043363 -
Lele39g0141 380 SMART sant 211 261 IPR001005 -
Lele39g0141 380 SMART sant 104 156 IPR001005 -
Lele39g0141 380 MobiDBLite consensus disorder prediction 193 215 - -
Lele39g0141 380 Pfam Myb-like DNA-binding domain 214 259 IPR001005 -
Lele39g0141 380 Pfam Myb-like DNA-binding domain 107 152 IPR001005 -
Lele39g0141 380 Gene3D - 213 263 - -
Lele39g0141 380 CDD SANT 214 259 IPR001005 -
Lele39g0141 380 ProSiteProfiles SANT domain profile. 106 158 IPR017884 -
Lele39g0141 380 CDD SANT 107 153 IPR001005 -
Lele39g0141 380 ProSiteProfiles SANT domain profile. 215 263 IPR017884 -
Lele39g0141 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 263 IPR017930 -
Lele39g0141 380 SUPERFAMILY Homeodomain-like 106 161 IPR009057 -
Lele39g0141 380 ProSiteProfiles Myb-like domain profile. 207 259 IPR001005 -
Lele39g0141 380 SUPERFAMILY Homeodomain-like 209 262 IPR009057 -
Lele39g0141 380 MobiDBLite consensus disorder prediction 285 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0141 Lele-ChrLele39 934871 938705 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele39g0141 Myb_DNA-binding 3.2e-12 CL0123