Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0112 ATGAAGGTGAAAGACGAAGTTGCCTCTCACTGCTTCAGTAGTGGATGCTCGCTGGTCGTGACGCTCGCAGGGATGGGGAGAGATGGATATTGGATACCACACGAATTGCCAGGGGTTTCAGACTCAGACTTGGGTCTACTCAGTCGTAGACCTTCTGTATTGTTTCTGCCTTTCTCCTCTCAGTTTCTATTTTCTGATGGGAGGCCTGCAATTTTGTCTGTGCATAGTGGCAAAGGGAAGGGAGCAGTAAAGAACTCTAAGGAATCACTGAAGCCTATCGATGACAGAAAGGTTGGAAAGCGAAAGGCTGCGGCTAAACCCGACAAAAGTAGTAAACGGCAAGCCAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCACCCAGTGCTTTCTTTGTCTTCCTTGAGGAGTTCAGAGCAACCTTTAAGAAAGAAAATCCTAATGTGAAAGCAGTATCAGCCGAGAAAGCTCCATATGAAGCCAAGGCTGCGAAAAGGAAAGCTGAGTATGAAAAACTTATGAATGCTTATAATAAAAAGCAGGCAAGTACAACGGATGATGGAGGTGATGAATCAGACAGGTCCAAATCTGAAGTTCATGATGAAGATGAAGAGGAGGCACACCAAGAAGAAGAGGAGGAGGAGGATGAAGAAGAGGAGGAGGAGGAGGATGACTGA 678 0.4602 MKVKDEVASHCFSSGCSLVVTLAGMGRDGYWIPHELPGVSDSDLGLLSRRPSVLFLPFSSQFLFSDGRPAILSVHSGKGKGAVKNSKESLKPIDDRKVGKRKAAAKPDKSSKRQAKAKKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAEKAPYEAKAAKRKAEYEKLMNAYNKKQASTTDDGGDESDRSKSEVHDEDEEEAHQEEEEEEDEEEEEEEDD 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0112 225 MobiDBLite consensus disorder prediction 81 125 - -
Lele39g0112 225 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 124 178 IPR009071 -
Lele39g0112 225 Pfam HMG (high mobility group) box 124 150 IPR009071 -
Lele39g0112 225 MobiDBLite consensus disorder prediction 159 174 - -
Lele39g0112 225 MobiDBLite consensus disorder prediction 204 225 - -
Lele39g0112 225 SMART hmgende2 123 179 IPR009071 -
Lele39g0112 225 Gene3D High mobility group box domain 107 193 IPR036910 -
Lele39g0112 225 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 85 212 IPR031061 -
Lele39g0112 225 MobiDBLite consensus disorder prediction 184 203 - -
Lele39g0112 225 SUPERFAMILY HMG-box 116 181 IPR036910 -
Lele39g0112 225 MobiDBLite consensus disorder prediction 76 128 - -
Lele39g0112 225 CDD HMGB-UBF_HMG-box 124 174 - -
Lele39g0112 225 Coils Coil 200 225 - -
Lele39g0112 225 Coils Coil 160 180 - -
Lele39g0112 225 MobiDBLite consensus disorder prediction 145 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0112 Lele-ChrLele39 767769 772155 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele39g0112 HMG_box 9.4e-08 CL0114