Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0111 ATGCGCAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGATATCCAGTTCGCCAATACTCTAGCTTCTGATTATCCGAGAGATTATGATGGTGCCTGCATCCAAATGAGATTATCCTACAGTCCAGCAGCTCAATTTTTTCTTTTTCTGGTTCAGTGGACTGATTGTCACCTTGCCGGAGCCTTGGGATTGCTTAGAATTCTCATATACAAGGCATACGAGGATGGTAAGACAACAATGTCCATTTACGAAAGAAAAGCCAGTCTGAAGGAGTTCTATTGCGTGATCTTTCCCTCTTTATTGCAACTCCGCAGAGGAATTACTGATGTAGAAGACAGAAAACAAAAAGAAATATGTGCTACTAAGTATAAGTCAAAACCTGTAGTCAGCAAAGGAAAGCATTCTGAAATTGACATAGCGAGAGAGGAAGAGTGTGGTATTTGCATGGAGATGAACAGCAAGATTGTATTGCCCAATTGCAATCACTCAATGTGCATGAAATGCTATCGAGATTGGCATGCACGATCTCAGTCTTGCCCTTTCTGCCGGGACAGTCTGAAAAGAGTGAATTCTGGTGACCTTTGGGTGTACATGAGCAACAATGAGATAGATGACATGGCCTCAATCACAAGGGAGAATTTAAAGAGGTTATTCGTGTACATTGAAAAGTTGCCTCTTCTTGTTCCAGATCCAATATTCATGTCTCATCCTGTCCGCTGGTGA 726 0.4201 MRKSFKDSLKALEADIQFANTLASDYPRDYDGACIQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTMSIYERKASLKEFYCVIFPSLLQLRRGITDVEDRKQKEICATKYKSKPVVSKGKHSEIDIAREEECGICMEMNSKIVLPNCNHSMCMKCYRDWHARSQSCPFCRDSLKRVNSGDLWVYMSNNEIDDMASITRENLKRLFVYIEKLPLLVPDPIFMSHPVRW 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0111 241 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Lele39g0111 241 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Lele39g0111 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 193 IPR013083 -
Lele39g0111 241 SUPERFAMILY RING/U-box 136 189 - -
Lele39g0111 241 FunFam RING/U-box superfamily protein 127 193 - -
Lele39g0111 241 PANTHER RING FINGER PROTEIN 41, 151 3 235 - -
Lele39g0111 241 SMART ring_2 146 183 IPR001841 -
Lele39g0111 241 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0111 Lele-ChrLele39 762621 765033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0111 90 188 C3H Transcription Factor Family AT5G01960 30.769 1.14e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1298 37 22093569 22095940 Lele39g0111 39 762621 765033 hybridization
Lele38g1195 38 22951075 22953892 Lele39g0111 39 762621 765033 hybridization