Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0104 ATGGCGTCTTACCAAGAAGCATTGCTCATGGAGAACGGAAACCTCAAGGAAGCGGCCGGCAAGGAGATAATGAGGCACGGCCGTTCGGCTCGCAAAATGTCCTCTTCCTCCTTGCGTAAGAAATCTGACCTCAAGCTTGTTTCCAAAGTTCGCTGCGCAATGCTCCGAAATTTGTTGGCAAATCTGCAAGAGGTCATTCTCGGGACTAAGCTTTCCGTCCTTTTCCCTGCGATTCCTCTCGCCATTGCTGCTGAATGCTATGGATTCGACCGACCCTGGGTATTTGCGTTGAGCATACTAGGACTTACACCACTTGCTGAACGAATCAGCTTCCTGACAGAACAAGTTGCTTATTACACAGGCCCCACAGCGGGAGGGCTTCTGAATGCGACATGCGGAAATGCGACAGAGCTCATAATAGCAATATTTGCTCTCAGCAACAATAAAATAGCTGTGGTCAAGTACTCTCTCTTAGGATCCATCCTTTCAAACCTTCTCTTAGTCCTTGGAACCTCTCTTTTCTGTGGTGGCATAGCAAACATTTCACGTCCACAAAAATATGACAGAAGACAAGTAGACGTGAACTCACTCATGCTTCTGCTTGCATTACTGTGCCACTTGCTTCCAATGCTATTCAGATATACTACTGCCTCAACTGCTCTCGCAGCAGAGCCATCTCTCCAATTATCAAGAGCTGCAAGTATTGTCATGTTGATTGCATATTTTGCTTACCTTGTCTTTCAACTCTGGACACATCGCCAATTATTTGAAGCGCAGGATGAAGACAAAAACAGTGACAGCGTTTCAGAAGAAGCTGCAGTGATGGGATTCTGGAGTGGGTTTGCCTGGCTGGTAGGGATGACAGTGTTCATATCATTGTTGTCTGAGTATGTGGTGGAGACAATAGAGGATGCATCAGATTCGTGGGGTCTGTCTGTCAGCTTCCTCAGCATAATTTTACTACCGATAGTAGGAAATGCAGCTGAACATGCAGGAGCAGTCATTTTTGCTTTTAAGAATAATCTGGACATCTCTTTGGGTGTTGCTTTGGGTTCTGCAACTCAAATTAGCTTGTTCGTGGTTCCCCTCTGTGTGATTGTTTCTTGGATAATGGGCCACAAAATGGATCTTAACTTCAACCTACTTGAAACGGGTTCACTTGCTTTGGCCATAATAGCCACTGCCTTCACTTTACAGGATGGAACGTCTCATTACATGAAAGGTTTTGTTCTCCTGCTCTGCTACGTTGTTATTGGGGCATGCTTTTTTCTACAGAGATCACCATTCAACCAAGCTCATCTCGGCAACATGGTGCCTCAATCAGAAACGGATGAAGTTTTCAAAGCTTAA 1350 0.4533 MASYQEALLMENGNLKEAAGKEIMRHGRSARKMSSSSLRKKSDLKLVSKVRCAMLRNLLANLQEVILGTKLSVLFPAIPLAIAAECYGFDRPWVFALSILGLTPLAERISFLTEQVAYYTGPTAGGLLNATCGNATELIIAIFALSNNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANISRPQKYDRRQVDVNSLMLLLALLCHLLPMLFRYTTASTALAAEPSLQLSRAASIVMLIAYFAYLVFQLWTHRQLFEAQDEDKNSDSVSEEAAVMGFWSGFAWLVGMTVFISLLSEYVVETIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAVIFAFKNNLDISLGVALGSATQISLFVVPLCVIVSWIMGHKMDLNFNLLETGSLALAIIATAFTLQDGTSHYMKGFVLLLCYVVIGACFFLQRSPFNQAHLGNMVPQSETDEVFKA 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0104 449 FunFam Vacuolar cation/proton exchanger 122 266 - -
Lele39g0104 449 TIGRFAM cax: calcium/proton exchanger 76 423 IPR004798 GO:0006816|GO:0015369
Lele39g0104 449 Pfam Sodium/calcium exchanger protein 280 418 IPR004837 GO:0016020|GO:0055085
Lele39g0104 449 Pfam Sodium/calcium exchanger protein 93 250 IPR004837 GO:0016020|GO:0055085
Lele39g0104 449 Gene3D - 269 423 IPR044880 -
Lele39g0104 449 Gene3D - 122 268 IPR044880 -
Lele39g0104 449 TIGRFAM caca2: calcium/proton exchanger 57 423 - -
Lele39g0104 449 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 25 428 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele39g0104 449 FunFam Vacuolar cation/proton exchanger 268 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0104 Lele-ChrLele39 722804 726374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0104 11 428 Antiporters AT2G38170 70.519 0.0 578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1306 37 22137349 22140832 Lele39g0104 39 722804 726374 hybridization
Lele38g1200 38 22988491 22992381 Lele39g0104 39 722804 726374 hybridization