Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0103 ATGTTTACCAACCCCACTTTTAGTAGGATAAAGCTGCTTGTTGTCGATCAACTTCATGTCTCTAATTTCTCACTTTCTCGAGGCTTGATGCAATACACGCGAGATCCCATATGCTGCACTTCCAGACCAGCAGCCTCACAACCATTGAAGAAAAGAGATTCGTCTTCCTTTCCAATTCTGCGTCTCCAGCTCATCAGAAAAGCTGACTTTGGAACAACTGAACTGGGTAAAAAAGCTAGGGAACTTAAAAGAGCATCTGAGTCTCTTGATCAGGAAGAGAGAAGTGGTTCAAAGGGTGGAAAATTTCACAAAAATGTTGAGGCAAAACTTGTTTTAGAAAAGAGCCAATATACAAAAGATGATCTGAAGTCTGAAAGTCAAAATGGATTAGAGAATGAGAATCTCAGTAATCATTACATGGTAAAGAGAGGGAAAGGCAATAATGAGGGTTCTCCATTTCCCCCTGTTTTCGCTATCCAAGGTTCTCTGATTGCTTTACTTCTTCTCCCTACAATGGCGGACTCACATTCCGCTACATTTCAACCTCATGTTGCTTCATCTTCCTCTTCTTCTACGGCCATTATCCATCCTTCAGGAGCTACTTCGTCGACTTCAGGATCTTCACGAGTACGCCGCCAAGAGGAAAGTCGAAGGCGTCATCATCGATCTCAATCATCTGGCCTAGAGCAGCAGCAGAATGTGGGCTTCGTCGATCGGACATATCAAAATTCGTTTTCAATGGCCAGGGATGATTCTTGGTCCTGCATCATGGTCCTTTTCACCTTTTGGTTCTTTGTGTCGATGACTATGATACTTGGAGTTTACGGTTCAATGAACCTCCTTCTTAGTCCAAGTGCTTCCATTCTTCTCCAACCTAGCCCCATATTCGTGCAATATATAAAGGTAGAAAACTTAGGGTCAAAACCAGGAGTCATGCTCTATGGTACATACGGAACCCCCGCTCTTGATGTTTTTACTGTTTGGACAGAAACTCGTAATGTAACCGTTCCAACTGATGTGCATAAGGAATGGAAATATTACCTCAATGAAGGGTCTCAAGTAAATATTTCATATCGCATGAGTTCTGAGAGCCCTTCTATTGTTCTTGTAATCGCAGAAGGGGATGAAGGCCTCTCTCAGTGGCTGGAGGATCCATCATATCCTAATAGCACATTCTCATGGAACATAGTCCATGGAACTGGTATGATTACACAGGACATATCCAGATCATCGAACTATTATTTGGCACTAGGAAATCTGGATGATGAGGAGGCGGCAGAGGTGGAACTGATCATCAGAGTAAGGTCTGCCATGTACAACACAACAGACGCTTACTACAAATGCACTTTGACTAGTGACCCATGCGGTTTGAATGTTTTCCTTCCTGATGGGAATGCAGCTGTCTTAACATCTCCTGCACCACAACAGAACACATCCGGTAATCAGTGGTATATCAAATTGTCCTATGGACCAAGATGGGTCACATACATTTTTGGCATGGGTGGATTGACTTTGCTTATGTTTGTGGTCTTCAACTACTTTAACAAGCTGCACTATTCTCAAGAAGATAGAGCAGGAGTTCAATACGAGGGAACAACACCTCAAAGAGTCCCTTTGCTTTCTCAAAAAGATGATGATATTTCCAGCTGGGGTTCATCATATGAATCCATGTCACAAGATGAGGAGGATCTTGACCTTCTTATAGGGGATTCCATTAACGGGAAGTCTTTAGCTGATGATGAAACCAGTAATAATACAAGGCGCCTTTGTGGAATATGCTTTGATGCTCCAAGGGATTGCTTCTTCCTTCCTTGTGGACACTGCGTGGCTTGCTTTGAATGTGCAACAAGGTTAGCAGAGGCAGAGGGTACCTGCCCCGTATGCCGTAAGAACATGAAGAAGGTGAGGAAGATATTTACTGTCTAA 1926 0.4309 MFTNPTFSRIKLLVVDQLHVSNFSLSRGLMQYTRDPICCTSRPAASQPLKKRDSSSFPILRLQLIRKADFGTTELGKKARELKRASESLDQEERSGSKGGKFHKNVEAKLVLEKSQYTKDDLKSESQNGLENENLSNHYMVKRGKGNNEGSPFPPVFAIQGSLIALLLLPTMADSHSATFQPHVASSSSSSTAIIHPSGATSSTSGSSRVRRQEESRRRHHRSQSSGLEQQQNVGFVDRTYQNSFSMARDDSWSCIMVLFTFWFFVSMTMILGVYGSMNLLLSPSASILLQPSPIFVQYIKVENLGSKPGVMLYGTYGTPALDVFTVWTETRNVTVPTDVHKEWKYYLNEGSQVNISYRMSSESPSIVLVIAEGDEGLSQWLEDPSYPNSTFSWNIVHGTGMITQDISRSSNYYLALGNLDDEEAAEVELIIRVRSAMYNTTDAYYKCTLTSDPCGLNVFLPDGNAAVLTSPAPQQNTSGNQWYIKLSYGPRWVTYIFGMGGLTLLMFVVFNYFNKLHYSQEDRAGVQYEGTTPQRVPLLSQKDDDISSWGSSYESMSQDEEDLDLLIGDSINGKSLADDETSNNTRRLCGICFDAPRDCFFLPCGHCVACFECATRLAEAEGTCPVCRKNMKKVRKIFTV 641
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0103 641 MobiDBLite consensus disorder prediction 81 102 - -
Lele39g0103 641 Pfam Domain of unknown function (DUF4793) 402 510 IPR032010 -
Lele39g0103 641 FunFam E3 ubiquitin-protein ligase APD2 579 640 - -
Lele39g0103 641 Pfam Zinc finger, C3HC4 type (RING finger) 587 635 - -
Lele39g0103 641 Coils Coil 75 95 - -
Lele39g0103 641 SMART ring_2 590 628 IPR001841 -
Lele39g0103 641 Pfam Domain of unknown function (DUF4792) 311 378 IPR032008 -
Lele39g0103 641 MobiDBLite consensus disorder prediction 189 209 - -
Lele39g0103 641 ProSiteProfiles Zinc finger RING-type profile. 590 629 IPR001841 -
Lele39g0103 641 MobiDBLite consensus disorder prediction 189 229 - -
Lele39g0103 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 640 IPR013083 -
Lele39g0103 641 PANTHER OS05G0521000 PROTEIN 223 641 - -
Lele39g0103 641 SUPERFAMILY RING/U-box 589 635 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele39g0103 Lele-ChrLele39 703973 714189 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0103 563 638 C3H Transcription Factor Family AT3G06140 31.579 9.37e-07 49.7