Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele39g0103 | ATGTTTACCAACCCCACTTTTAGTAGGATAAAGCTGCTTGTTGTCGATCAACTTCATGTCTCTAATTTCTCACTTTCTCGAGGCTTGATGCAATACACGCGAGATCCCATATGCTGCACTTCCAGACCAGCAGCCTCACAACCATTGAAGAAAAGAGATTCGTCTTCCTTTCCAATTCTGCGTCTCCAGCTCATCAGAAAAGCTGACTTTGGAACAACTGAACTGGGTAAAAAAGCTAGGGAACTTAAAAGAGCATCTGAGTCTCTTGATCAGGAAGAGAGAAGTGGTTCAAAGGGTGGAAAATTTCACAAAAATGTTGAGGCAAAACTTGTTTTAGAAAAGAGCCAATATACAAAAGATGATCTGAAGTCTGAAAGTCAAAATGGATTAGAGAATGAGAATCTCAGTAATCATTACATGGTAAAGAGAGGGAAAGGCAATAATGAGGGTTCTCCATTTCCCCCTGTTTTCGCTATCCAAGGTTCTCTGATTGCTTTACTTCTTCTCCCTACAATGGCGGACTCACATTCCGCTACATTTCAACCTCATGTTGCTTCATCTTCCTCTTCTTCTACGGCCATTATCCATCCTTCAGGAGCTACTTCGTCGACTTCAGGATCTTCACGAGTACGCCGCCAAGAGGAAAGTCGAAGGCGTCATCATCGATCTCAATCATCTGGCCTAGAGCAGCAGCAGAATGTGGGCTTCGTCGATCGGACATATCAAAATTCGTTTTCAATGGCCAGGGATGATTCTTGGTCCTGCATCATGGTCCTTTTCACCTTTTGGTTCTTTGTGTCGATGACTATGATACTTGGAGTTTACGGTTCAATGAACCTCCTTCTTAGTCCAAGTGCTTCCATTCTTCTCCAACCTAGCCCCATATTCGTGCAATATATAAAGGTAGAAAACTTAGGGTCAAAACCAGGAGTCATGCTCTATGGTACATACGGAACCCCCGCTCTTGATGTTTTTACTGTTTGGACAGAAACTCGTAATGTAACCGTTCCAACTGATGTGCATAAGGAATGGAAATATTACCTCAATGAAGGGTCTCAAGTAAATATTTCATATCGCATGAGTTCTGAGAGCCCTTCTATTGTTCTTGTAATCGCAGAAGGGGATGAAGGCCTCTCTCAGTGGCTGGAGGATCCATCATATCCTAATAGCACATTCTCATGGAACATAGTCCATGGAACTGGTATGATTACACAGGACATATCCAGATCATCGAACTATTATTTGGCACTAGGAAATCTGGATGATGAGGAGGCGGCAGAGGTGGAACTGATCATCAGAGTAAGGTCTGCCATGTACAACACAACAGACGCTTACTACAAATGCACTTTGACTAGTGACCCATGCGGTTTGAATGTTTTCCTTCCTGATGGGAATGCAGCTGTCTTAACATCTCCTGCACCACAACAGAACACATCCGGTAATCAGTGGTATATCAAATTGTCCTATGGACCAAGATGGGTCACATACATTTTTGGCATGGGTGGATTGACTTTGCTTATGTTTGTGGTCTTCAACTACTTTAACAAGCTGCACTATTCTCAAGAAGATAGAGCAGGAGTTCAATACGAGGGAACAACACCTCAAAGAGTCCCTTTGCTTTCTCAAAAAGATGATGATATTTCCAGCTGGGGTTCATCATATGAATCCATGTCACAAGATGAGGAGGATCTTGACCTTCTTATAGGGGATTCCATTAACGGGAAGTCTTTAGCTGATGATGAAACCAGTAATAATACAAGGCGCCTTTGTGGAATATGCTTTGATGCTCCAAGGGATTGCTTCTTCCTTCCTTGTGGACACTGCGTGGCTTGCTTTGAATGTGCAACAAGGTTAGCAGAGGCAGAGGGTACCTGCCCCGTATGCCGTAAGAACATGAAGAAGGTGAGGAAGATATTTACTGTCTAA | 1926 | 0.4309 | MFTNPTFSRIKLLVVDQLHVSNFSLSRGLMQYTRDPICCTSRPAASQPLKKRDSSSFPILRLQLIRKADFGTTELGKKARELKRASESLDQEERSGSKGGKFHKNVEAKLVLEKSQYTKDDLKSESQNGLENENLSNHYMVKRGKGNNEGSPFPPVFAIQGSLIALLLLPTMADSHSATFQPHVASSSSSSTAIIHPSGATSSTSGSSRVRRQEESRRRHHRSQSSGLEQQQNVGFVDRTYQNSFSMARDDSWSCIMVLFTFWFFVSMTMILGVYGSMNLLLSPSASILLQPSPIFVQYIKVENLGSKPGVMLYGTYGTPALDVFTVWTETRNVTVPTDVHKEWKYYLNEGSQVNISYRMSSESPSIVLVIAEGDEGLSQWLEDPSYPNSTFSWNIVHGTGMITQDISRSSNYYLALGNLDDEEAAEVELIIRVRSAMYNTTDAYYKCTLTSDPCGLNVFLPDGNAAVLTSPAPQQNTSGNQWYIKLSYGPRWVTYIFGMGGLTLLMFVVFNYFNKLHYSQEDRAGVQYEGTTPQRVPLLSQKDDDISSWGSSYESMSQDEEDLDLLIGDSINGKSLADDETSNNTRRLCGICFDAPRDCFFLPCGHCVACFECATRLAEAEGTCPVCRKNMKKVRKIFTV | 641 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele39g0103 | 641 | MobiDBLite | consensus disorder prediction | 81 | 102 | - | - | |
| Lele39g0103 | 641 | Pfam | Domain of unknown function (DUF4793) | 402 | 510 | IPR032010 | - | |
| Lele39g0103 | 641 | FunFam | E3 ubiquitin-protein ligase APD2 | 579 | 640 | - | - | |
| Lele39g0103 | 641 | Pfam | Zinc finger, C3HC4 type (RING finger) | 587 | 635 | - | - | |
| Lele39g0103 | 641 | Coils | Coil | 75 | 95 | - | - | |
| Lele39g0103 | 641 | SMART | ring_2 | 590 | 628 | IPR001841 | - | |
| Lele39g0103 | 641 | Pfam | Domain of unknown function (DUF4792) | 311 | 378 | IPR032008 | - | |
| Lele39g0103 | 641 | MobiDBLite | consensus disorder prediction | 189 | 209 | - | - | |
| Lele39g0103 | 641 | ProSiteProfiles | Zinc finger RING-type profile. | 590 | 629 | IPR001841 | - | |
| Lele39g0103 | 641 | MobiDBLite | consensus disorder prediction | 189 | 229 | - | - | |
| Lele39g0103 | 641 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 569 | 640 | IPR013083 | - | |
| Lele39g0103 | 641 | PANTHER | OS05G0521000 PROTEIN | 223 | 641 | - | - | |
| Lele39g0103 | 641 | SUPERFAMILY | RING/U-box | 589 | 635 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele39g0103 | Lele-ChrLele39 | 703973 | 714189 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele39g0103 | 563 | 638 | C3H Transcription Factor Family | AT3G06140 | 31.579 | 9.37e-07 | 49.7 |