Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0101 ATGGTGGGAAAGATAGACGCCACTTCGCGGGAAAAGCTAGCAAGTCTTGTGAACTCTGTCAAGTTGGCCATGGATATACCCTCCAAGCTCGATTACTTGCGGCAACTGAAGCTAGAGTTGCCTCAGGAAGACCCCGTTTTGCTTACCGAGTTTCTTCCCTGTCTCTTCGATTTTCAGTCCGACCGTTTCAGTCCAGTTCGCAAATTTGTCACCGAGATGCTTGGTGAAATTGGATCTAACAACACGGAGTTCTTGCCTGACATTATACCTGTGCTCCTTGCTGTTTTGGATGATGATACACCTGCTGTTGTTCGTCAAGCTATATCGTGTGGAATTAATTTATTTCATTCCACTCTTGGGAAAATTGCAATACAGGGTCTATACTCCAGTGATCTGGACAGTGCACTTGAATCTGCATGGGCATGGATGGTAAAGTTCAAAGACAAAGTATACTCGCTTGCTTTTCAACATGGTAGTGGTGGTACAAAGTTGCTGGCACTGAAGTTTGTTGGAGCAGTTATTCTTCTATACACACCAAATCCAAATGGTTCCTCAGAGGCCCCTCCTCATCAAGGAGGGATTAGGGAGTTTAACATATCATGGATTCGCAAGGGTCATCCTGTACTCAACTTTAAAGATTTGTCAATTGATGCTAGTCGTAGTTTGGGTCTTCTGCTTGATCAACTCAGATTTCCAACAGTGAATTCTCTCAGTAACTCAGTGACTGTTGTGCTAATTAACAGCCTTTCAGCAATTGCAAAAGATAGGCCTACATTCTATGGCCGCATTTTGCCAGTTTTGCTTGGTTTGGAACCATCAAGCTCTGTTGTTAATGGGATCTGTATAACAGCAGTACATCATGCGATGAAAAATGCCTTTCTCACTTGCTTGAAATGTACACATCCAAGTGCTGCTCCGTGGAGAGAACGTTTGGCAGGTGCGTTGGAGGAAATGCAGTCTGAAGGGATGGCAGATCAGGTGTTCCACCGGGTTTCTGAGACTAATGGAAGTATAAAGAAAGAGAAAGATGATGATCTATATATTAAGGAAGAAAAACCAGTTATACCTTCATTTGATTCATTGCACAGTAATTTGGGGAGGAAACGATCAGGATCGCAGGATGGAAGTGATTTAGCTGAAGATGATGTTCCTGAAAAACGTGTCAAAAAAACAACCATTGTCTTAGAACCTAAGAAAGAGTTAGATGGAAGCACAACAGTATCTCAATACAGCAATGCAACTGCACCACTTCCATCAAAAAGAGAAGTGGATAATGGGCCTGTTCAGCAACTTGTTGCAATGTTTGGTGCTTTGGTTGCTCAGGGTGAAAAAGCTGTTGCATCTTTGGAGATTCTTATCTCAAGTATCTCCTCAGATTTGCTAGCTGAGGTGGTAATGGCTAATATGTGTAACCTGCCTCCCAACAATCCAACTGCTGAAGGAGATGATGAGCCACTGCATGACATCAGTATAATAGGTTCTGATAGCAACGCTAAATATCCACCATCATTTGTTGATAGTGTCATGTCGCTTTCTAGTACATTCCCATCAATAGCTTCGCTTCTTGAAGTCAATCAATCAATATCCAATGAGGTAAAATCTCAAGGGGAAGAAGAAAATTCTGCAACTGGAGTGGATGGTAATGTTTTGCATTCTGGATTGAATCCTTCATCTGAAAATGTGATGATGTCCTCTGATTTTCCATCTTCTGATGCCAAAATACCGGGAATGGCGAGTGTGAGCACAGCTGCCCCTCCTGACATCCATGATGGGGGCAATTTAGAGAGTGGAATACCTGGCCTGGGTTCTTTTGGTCGTAGTGACACCTTGTCAGAAACTGTAGCCGCTTTGGCTTCCTCTGATATAGAAGAAGCCAGTCAAGAGCAAGTTACGAGTTTTGGTCAAAGATCACCCCTTGACACTGTTCCATCAATCTCAACAGATAGGTCTGAGGAGATGAGCCCAAAAGCAGCTGTTATTGATGTAAATAGTGCAGTATCCTCAGCAGCAACTTCTGACAGGTCATCATCTCGGTTGGTTCTGCCAAAGATGACTGCACCTGTTGTTGACCTTGCAGATGAACAGAAGGATAATTTGCAAAAATTGGCTTTTATTCGTGTTATTGATGCTTACAAGCAAATAGCAGTTGCCGGAGGATCGAAAGTTCGATTTTCAATACTTGTTTATCTAGGAGTTGAGCTTCCCTTGGACCTAGACCCATGGAAACTACTGCAAAAGCATGTCTTGGTTGATTATACAAGTCATGAGGGACACGAGTTGACTTTGCGTGTCCTATACAGGTTATTTGGTGAGGCTGAAGAGGAGCCTGATTTCTTTTCTTCTACAACAGCTGCTTCTGTATACGAAACATTCCTCCTAACAGTGGCAGAAGCACTAAGAGATTCTTTTCCACCTTCTGATAAATCCTTCAGTAGATTGCTTGGTGAAGCTCCTTATTTGCCAAAGTCAGTTTTAAAAGTTTTAGAGAACATGTGTTCTCCTGGAAATTCGGATAAAGTTGAAAAGGAGTCACAGAGTGGGGATAGAGTTACCCAAGGCCTCAGTGCTGTATGGAGTCTGATTCTGCTGAGGCCTCCTATTCGAGATACCTGCCTGAAAATTGCTCTTCAGAGTGCAGTGCATCAATTGGAGGAAGTGCGGATGAAGGCAATACGTCTGGTGGCAAATAAGCTTTATCCTTTAACATCCATTTCTCATCAAATAGAAGATTTCGCAAAGGAAATGCTGTTATCAGTTATGAGTGGTGATGCATCTGAAACTGCTGATGGTGAAGGATCTATTGCTGAAACCCCAAAGGGACCTGATAATGAAAAGTCTTCCAATGAACCATCGTCATTGAGTGGCAACAGTAAGGATATCTGCTCTGATAATCACCAGGCATGTGCATCTGAAAGTGTCTCACTGATTTCTGTCTCTGAGGCTCAGAGATGCATGTCGTTGTATTTTGCTATGTGTACCAAGCAACATTCTCTCTTTCGGCAAATATTTGTCATCTATAAAAGCACATCAAAGGCAGTCAAGCAGGCAGTTCATCGTCATATCCCTATACTAGTTCGTACTATGGGCTCATCTCCAGATCTCCTTGAAATTATTTCAGATCCCCCACATGGAAGTGAGAACCTCCTAATGCAGGTGTTGTACACACTTACTGATGGGACAGTCCCTTCAAAGGATTTAGTAGTTACTGTCAAAAGATTACATGATTCAAAAGTTAAGGATGCGGAGATTCTTATTCCTGTATTGGCACATCTGCCAAAAGATGAGGTTATGCTGGTCTTTCCTCACATTGTAAATCTTCCTCTGGATAAGTTCCAAGTTGCACTTGCTCGCATGTTACAGAAATCATCAAATTCTGGTCCCGTGCTTACTCCTGCCGAAATATTAATAGCTATTCATGGAATTGATCCTGAAAGGGATGGAATTCCCTTAAAAAAGGTCACAGATGCATGCAATGCTTGCTTTGAGCAGCGGCAGATTTTCACTCAAGAAGTTCTCGCCAAAGTTCTAAATCAATTGGTTGAGCAAATCCCTCTTCCTTTATTGTTCATGCGGACAGTATTGCAAGCTATTGGTGCTTTTCCGACACTGGTGGACTTTATAATGGGTATTCTCTCTCGTCTTGTGGGAAAGCAGATATGGAAATACCCGAAGTTGTGGGTGGGATTCTTGAAGTGTGCACAATTGACACAACCTCAGTCATTCAGTGCTTTGCTTCAGCTACCTCCAGCACAACTGGAAAATGCTTTGAACAGATCTGCAGCACTTAAGGCACCATTGGTAGCTCATGCTAGTCAGCCAGATATCCAATCTTCACTACCCAGGTCCGTGTTGGTTGTTCTGGGAATTGCGTCAGATCCTCAGGTTCCAAGTCAACCACAAACTAGTCAAACAAAGATAAGTGAGACCGGCAACTCCGACAAGGATACAGCAACAGAAAAATCCAAAGAATCTTCTACAGCTAGCTGA 3987 0.4279 MVGKIDATSREKLASLVNSVKLAMDIPSKLDYLRQLKLELPQEDPVLLTEFLPCLFDFQSDRFSPVRKFVTEMLGEIGSNNTEFLPDIIPVLLAVLDDDTPAVVRQAISCGINLFHSTLGKIAIQGLYSSDLDSALESAWAWMVKFKDKVYSLAFQHGSGGTKLLALKFVGAVILLYTPNPNGSSEAPPHQGGIREFNISWIRKGHPVLNFKDLSIDASRSLGLLLDQLRFPTVNSLSNSVTVVLINSLSAIAKDRPTFYGRILPVLLGLEPSSSVVNGICITAVHHAMKNAFLTCLKCTHPSAAPWRERLAGALEEMQSEGMADQVFHRVSETNGSIKKEKDDDLYIKEEKPVIPSFDSLHSNLGRKRSGSQDGSDLAEDDVPEKRVKKTTIVLEPKKELDGSTTVSQYSNATAPLPSKREVDNGPVQQLVAMFGALVAQGEKAVASLEILISSISSDLLAEVVMANMCNLPPNNPTAEGDDEPLHDISIIGSDSNAKYPPSFVDSVMSLSSTFPSIASLLEVNQSISNEVKSQGEEENSATGVDGNVLHSGLNPSSENVMMSSDFPSSDAKIPGMASVSTAAPPDIHDGGNLESGIPGLGSFGRSDTLSETVAALASSDIEEASQEQVTSFGQRSPLDTVPSISTDRSEEMSPKAAVIDVNSAVSSAATSDRSSSRLVLPKMTAPVVDLADEQKDNLQKLAFIRVIDAYKQIAVAGGSKVRFSILVYLGVELPLDLDPWKLLQKHVLVDYTSHEGHELTLRVLYRLFGEAEEEPDFFSSTTAASVYETFLLTVAEALRDSFPPSDKSFSRLLGEAPYLPKSVLKVLENMCSPGNSDKVEKESQSGDRVTQGLSAVWSLILLRPPIRDTCLKIALQSAVHQLEEVRMKAIRLVANKLYPLTSISHQIEDFAKEMLLSVMSGDASETADGEGSIAETPKGPDNEKSSNEPSSLSGNSKDICSDNHQACASESVSLISVSEAQRCMSLYFAMCTKQHSLFRQIFVIYKSTSKAVKQAVHRHIPILVRTMGSSPDLLEIISDPPHGSENLLMQVLYTLTDGTVPSKDLVVTVKRLHDSKVKDAEILIPVLAHLPKDEVMLVFPHIVNLPLDKFQVALARMLQKSSNSGPVLTPAEILIAIHGIDPERDGIPLKKVTDACNACFEQRQIFTQEVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFPTLVDFIMGILSRLVGKQIWKYPKLWVGFLKCAQLTQPQSFSALLQLPPAQLENALNRSAALKAPLVAHASQPDIQSSLPRSVLVVLGIASDPQVPSQPQTSQTKISETGNSDKDTATEKSKESSTAS 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0101 1328 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1318 - -
Lele39g0101 1328 MobiDBLite consensus disorder prediction 629 654 - -
Lele39g0101 1328 MobiDBLite consensus disorder prediction 1293 1328 - -
Lele39g0101 1328 MobiDBLite consensus disorder prediction 924 957 - -
Lele39g0101 1328 MobiDBLite consensus disorder prediction 1293 1311 - -
Lele39g0101 1328 MobiDBLite consensus disorder prediction 402 418 - -
Lele39g0101 1328 SUPERFAMILY ARM repeat 43 271 IPR016024 -
Lele39g0101 1328 Pfam Symplekin tight junction protein C terminal 1080 1258 IPR022075 -
Lele39g0101 1328 ProSiteProfiles HEAT repeat profile. 88 127 IPR021133 -
Lele39g0101 1328 MobiDBLite consensus disorder prediction 940 957 - -
Lele39g0101 1328 MobiDBLite consensus disorder prediction 358 422 - -
Lele39g0101 1328 Gene3D - 2 345 IPR011989 -
Lele39g0101 1328 MobiDBLite consensus disorder prediction 373 397 - -
Lele39g0101 1328 MobiDBLite consensus disorder prediction 629 651 - -
Lele39g0101 1328 MobiDBLite consensus disorder prediction 531 554 - -
Lele39g0101 1328 Pfam Symplekin/PTA1 N-terminal 101 319 IPR032460 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0101 Lele-ChrLele39 681991 698553 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele39g0101 39 681991 698553 Lele42g0139 42 1107207 1115105 CCT
Lele39g0101 39 681991 698553 Lele44g1212 44 20611651 20614830 CCT
Lele37g1310 37 22176136 22189075 Lele39g0101 39 681991 698553 hybridization
Lele38g1204 38 23027246 23032568 Lele39g0101 39 681991 698553 hybridization