Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0099 ATGTGTGGGTCAATGTATAATTTAATGAAAAGCACGATTGAATTGAATTACATAAACCACGCTCGTCTTCGTCATTCTCTGTTGCTTTTCCTGAACCGTTTCCCGTATGTCTGTTCTCTGAACCTCACGATCTCTTGGATCCGTACTCATGGTCTCCTCGCTGCGCCCTCTTGGCACTCGGAATCCCTCCTCCACATTCAATTTGTGCTAGTATACTCATTTCGAATCGATTTGCTTAGATCTCTTCATCGCGTTATGGAAATGGCTTCTAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCAGGAGTTGTTCGTGCTTTAACTCAAGATGTTGATGAATTTTATGGGCTCTGTGATCCAGATAAGGAGAATTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCTGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGCACCGCAGGGACTGGCTTTCTCTGGTTGCTGTCCACAGTGATTCATGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCCCGACTTAACCGCAATGAAAGGAAACGGTTATTCAGCTTGATCAATGATCTTCCCACTGTTTTTGAAGTTGTGACTGAGAGGAAACCATTAAAGGACAAGCCCACTGTGGACAGTGGCAGCAAATCTCGGGGCAGTACCAAGAGATCGAGTGATGGGAAAGTGAAAAGCAACCCAAAGTTTGCCGATGAAGGTTACGAGGAGGACGAGGATGAGCATAACGAAACCCTTTGTGGTAGCTGTGGTGGGAATTACAATGCAGATGAATTTTGGATTGGGTGTGATATCTGCGAGAGATGGTTCCACGGGAAATGTGTGAAAATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGTAGCATGAGGAGAGGTAGGTAG 972 0.4558 MCGSMYNLMKSTIELNYINHARLRHSLLLFLNRFPYVCSLNLTISWIRTHGLLAAPSWHSESLLHIQFVLVYSFRIDLLRSLHRVMEMASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPLKDKPTVDSGSKSRGSTKRSSDGKVKSNPKFADEGYEEDEDEHNETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSMRRGR 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0099 323 MobiDBLite consensus disorder prediction 225 256 - -
Lele39g0099 323 MobiDBLite consensus disorder prediction 225 261 - -
Lele39g0099 323 FunFam PHD finger alfin-like protein 263 319 - -
Lele39g0099 323 PANTHER CPG BINDING PROTEIN 91 322 IPR045104 GO:0006355|GO:0042393
Lele39g0099 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 318 IPR013083 -
Lele39g0099 323 ProSiteProfiles Zinc finger PHD-type profile. 268 320 IPR019787 -
Lele39g0099 323 SUPERFAMILY FYVE/PHD zinc finger 259 321 IPR011011 -
Lele39g0099 323 Pfam Alfin 94 219 IPR021998 GO:0006355|GO:0042393
Lele39g0099 323 ProSitePatterns Zinc finger PHD-type signature. 271 317 IPR019786 -
Lele39g0099 323 SMART PHD_3 270 318 IPR001965 -
Lele39g0099 323 CDD PHD_AL_plant 270 320 IPR044104 -
Lele39g0099 323 Pfam PHD-finger 271 318 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0099 Lele-ChrLele39 674188 677155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0099 89 323 Alfin-like Transcription Factor Family AT5G05610 77.119 1.40e-120 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele39g0099 Alfin 2.9e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0039 42 276644 293293 Lele39g0099 39 674188 677155 CCT
Lele43g1321 43 21308493 21325354 Lele39g0099 39 674188 677155 CCT
Lele44g1313 44 21360687 21380157 Lele39g0099 39 674188 677155 CCT
Lele37g1313 37 22194043 22197901 Lele39g0099 39 674188 677155 hybridization