Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0098 ATGGCTTCCAATTGCTCTCCTTCTGATGCCTCTGCAAAAGAACGCCTTCGTTGGACTCAGCAACTCCATGATTTCTTCGTTGAAGCTGTCAACAGACTTGGTGGCCCTGATAGAGCAACACCAAAGAGTATAGTGAAGGAGATGACGAGTAAGGGAGTATCTGGAATCACCATTTATCACGTCAAGAGCCACTTGCAGAAATACAGGATCAACAAGTTGATTCCAGAGTCTGCTACTAGTAAGTTCTCTTAA 252 0.4444 MASNCSPSDASAKERLRWTQQLHDFFVEAVNRLGGPDRATPKSIVKEMTSKGVSGITIYHVKSHLQKYRINKLIPESATSKFS 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0098 83 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 73 IPR017930 -
Lele39g0098 83 SUPERFAMILY Homeodomain-like 12 71 IPR009057 -
Lele39g0098 83 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Lele39g0098 83 Pfam Myb-like DNA-binding domain 16 69 IPR001005 -
Lele39g0098 83 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 76 IPR044848 GO:0003700
Lele39g0098 83 FunFam Two-component response regulator 9 73 - -
Lele39g0098 83 Gene3D - 12 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0098 Lele-ChrLele39 671326 672197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0098 1 77 G2-like Transcription Factor Family AT5G06800 62.338 1.36e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele39g0098 Myb_DNA-binding 2.9e-07 CL0123