Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0056 ATGATGCATCATCAGACTCTTCTTCAGCCCCCCACCTGGTCACTCCCCAATGACATCACCTCTGTTATTGATCCATTCGATCTTCCCCCCACCTTCTTTGAAAATGATTTCCCATATCCAGTTGAAATGGGATCAGAAGCATCCAAATCCATAGAGAATTATTCCTCCTTCAATGAATTTGAAGTTTCTTCTGTCTTCTTCTCTCAAGATAATTTCCAGTACCCAGTTCATGAAGAAGATATTCTGGGAATATCATCCATAGACTGGGATGCTCTTGAACCTGATTTCAGTACCCAGTTTTTGAATATCCATGGATACCCAGAAGACAGTGAAGAAAGCTTTCAAACTTCCCAGAATCTATCTTCTGAAGCAGAAGATTCTTGGAGTTCTAGTCCATCCTCTCTTCAACTACCATCGTTGAACTTGCCTCAAGAAGACATGGAAATGGATACCCACGTGATTCTTCCGCATCTCCTTGAGGCCCATGTGGAGGCGAGAGATCAGAACCAGAATGCTCTGGTAGAAGAAACCCTGAGATGCATAAGCCAGAAAACAAACCCAGTTGCAGAAGATCCTCAGGAACGCCTAGCATTCCACTATTCCTCACAAAACATCACAGGAAATCCAGAGGGGCATTTCCTCAAACAGGAGGCGTGCAAAAATTTTGATCCTGCATTCAAGGTATTTTACCAAAGCACCCCCCATGGAAGATTTGCTCATTTTGCAGCCAATTCAGCAATTCTAGAAGCCATACCAGAGGATTCGGAAGTTATACACATAATAGACTTCGACATGGGAGAAGCGGTTCAGTGGCCTCCTGTGATAGAGGCCATTTCTAAACAGAACAAGGCGCTCAAGTTAACATCAATCAAATGGGAAACAGAGCAAGAAAACTCTGACGAACCCGGAAGAAGGAACCTTATTGAACACGCAAGATCATGTGGTCTCAAGGTGAAGATAGAAGAAAAGAGTTTTGAGGAATTAGTTACAGAACACAAGAGATTGAACAAAAGAGGTGGGAATGTGAAGAGAGATTTCGTAATCTTTAATTGCATGGTTGGCCTTCCTCACATGGGGAGAGGAAGAAGCAGAAGATCAGTCATGGAGTTTCTAAATTTAGGCAAGAACATGATCAACAAGAACAGCTGCAACAGGGGAATCATCACTTTTGGGGACGGAGAAGCAGACGACAAGCTGAGAAATAGCCTGAACTTCAGGTCATTCTTTGACGGAAACATGAGGCATTACAAGGTCCTAATGGAATCAATTGAATCAAATTTCCCAGCTTGTTTCTCACAAGCAAGAACAGCGATAGAGTTCTTATTCGTGGGACCCTATGTGTCTTCCGTTGCTTGGACAAAGAAGTGGGAAGAAGTGAGGGGAAATTGCCATTTTCATGCAGGGAACGGAAGAAGATTGAGCCAAGAGATATTGATGGAAGCGAGGGAAATGTTGGGAGGAAGCAGCAGGGAGGGGTCATATGAGGCAAGGATTGAAGGGCAAAATGGTAATGAAATGGTTCTCTTGTGGAAGGGGACACACCTAGTCAAAGTATCAACATGGGGAAGTCAAAGGGCCTGA 1581 0.4371 MMHHQTLLQPPTWSLPNDITSVIDPFDLPPTFFENDFPYPVEMGSEASKSIENYSSFNEFEVSSVFFSQDNFQYPVHEEDILGISSIDWDALEPDFSTQFLNIHGYPEDSEESFQTSQNLSSEAEDSWSSSPSSLQLPSLNLPQEDMEMDTHVILPHLLEAHVEARDQNQNALVEETLRCISQKTNPVAEDPQERLAFHYSSQNITGNPEGHFLKQEACKNFDPAFKVFYQSTPHGRFAHFAANSAILEAIPEDSEVIHIIDFDMGEAVQWPPVIEAISKQNKALKLTSIKWETEQENSDEPGRRNLIEHARSCGLKVKIEEKSFEELVTEHKRLNKRGGNVKRDFVIFNCMVGLPHMGRGRSRRSVMEFLNLGKNMINKNSCNRGIITFGDGEADDKLRNSLNFRSFFDGNMRHYKVLMESIESNFPACFSQARTAIEFLFVGPYVSSVAWTKKWEEVRGNCHFHAGNGRRLSQEILMEAREMLGGSSREGSYEARIEGQNGNEMVLLWKGTHLVKVSTWGSQRA 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0056 526 Pfam GRAS domain family 157 521 IPR005202 -
Lele39g0056 526 MobiDBLite consensus disorder prediction 109 139 - -
Lele39g0056 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 132 515 IPR005202 -
Lele39g0056 526 MobiDBLite consensus disorder prediction 108 139 - -
Lele39g0056 526 ProSiteProfiles GRAS family profile. 146 522 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0056 Lele-ChrLele39 389290 390870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele39g0056 222 521 GRAS Transcription Factor Family AT5G17490 24.534 5.19e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele39g0056 GRAS 4.4e-35 CL0063