Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele39g0042 ATGGATTCCTCCTCTTCTCCCATTTCCTTCCAAGGCCTTCCTGAAGCTTCCCCGAAGCCTCACAAGAAACGCCTAGTCACAACCTTAATGGAGGCAGCCACCCTTCAGATTCCTTCCTTCAAAGAAAACACCTACTTCATCTCCCACTTGAAATCCTCCGAGAAGAAGGCTCTTCAAGAGCTCAAAGGCAATCTCAAAGCCTCTGATTCCTCTGCATGTTCCATGCGGGGCGTTTCGCTTCTTGGAGGTGACGAAAGAGCTGATGTCATTCTCTTGAAATTTCTGAGGCCAGAGATTTCAGAGGAGGGCCACCCTGTGTGCTACAATGCTTATGGGGTTTTCAAAGATAAAGAAATGTACGAAAGAATATTTGCTGATGAAGAGAAGCTTAATAAATTTCTGAGATGGAGAGTTCAAGTTCTGGAGAGAGGCATTAAGCTTCTTCAGTTCAAGCCTGGTGGGGTCACCTCCATTATTCAAGTTACTGACCTTAAGGACATGCCTAAGAGAGAGCTTAGATTGGCCTCTAATCAGATCCTCAATCTGTTCCAAGACAATTACCCAGAAATGGTGGCTCGTAAGATTTTCATCAATGTCGCGTGGTACTTCAGCTTGTTGTATTCAATGTTCAGTCCTTTCCTGACCCAACGAACTAAGAGCAAGTTCGTGATCTCTAAGGAAGGAAATGCCGCGGAGACGCTATACCAGAGCAACAATAACATGGGACATAGTGGTGGGAGGGTGGGAGTTGGAGTACAGTGCGGAGTTTGTGCCAAGTGGAGAAGGAAGGCAAGTTGGTTCTTTCTGTGGATAACAGTTGCTCTCGCAGGAAGAAAGTTGCAGCTTATCGCTATATCGTGCGCAAATCCAACTGAAGATGCTGCTTCATGTTTGTATTGTATTCTTTCTTTGAAATGCGAGAGATCAGATTCTGTAATAGCTAGTTGCAGTGTAAAAAGAGAGAAGCTGCCGTTTGATCTCCTCAGTGGCCATTCCTTAGCAGCCGTTGGATTGGGTACCTGGAAATCTGGTTCTGATGCCTCCTCTTCTGTGTATTCTGCCATTGTTCAGGCAGGTTATAGGCATATTGACACTGCTTCGCAGTGCACTGAATTGGCCCCGGAATGGCATGGTGTATATATTTTCAAAGAAGCAGATTCATTGGCCGTTTCGTCTGAAAGAAGGAGCAAGCAGACCACCAAAGGAAGGGGAAAACAAGACTTCAAGGCCCTCAGCTGCATCCCTGATCAGAGACGAGTATTGGATGGTGAAGAGCTGTTTGTGAACGAAAGCGCAGGACCACTCAAGAGTGCAGATGTTTGGGACCATGAAGATTAG 1338 0.4604 MDSSSSPISFQGLPEASPKPHKKRLVTTLMEAATLQIPSFKENTYFISHLKSSEKKALQELKGNLKASDSSACSMRGVSLLGGDERADVILLKFLRPEISEEGHPVCYNAYGVFKDKEMYERIFADEEKLNKFLRWRVQVLERGIKLLQFKPGGVTSIIQVTDLKDMPKRELRLASNQILNLFQDNYPEMVARKIFINVAWYFSLLYSMFSPFLTQRTKSKFVISKEGNAAETLYQSNNNMGHSGGRVGVGVQCGVCAKWRRKASWFFLWITVALAGRKLQLIAISCANPTEDAASCLYCILSLKCERSDSVIASCSVKREKLPFDLLSGHSLAAVGLGTWKSGSDASSSVYSAIVQAGYRHIDTASQCTELAPEWHGVYIFKEADSLAVSSERRSKQTTKGRGKQDFKALSCIPDQRRVLDGEELFVNESAGPLKSADVWDHED 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele39g0042 445 CDD SEC14 94 236 IPR001251 -
Lele39g0042 445 Pfam CRAL/TRIO domain 101 236 IPR001251 -
Lele39g0042 445 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 236 IPR001251 -
Lele39g0042 445 SUPERFAMILY NAD(P)-linked oxidoreductase 329 367 IPR036812 -
Lele39g0042 445 Gene3D - 97 237 IPR036865 -
Lele39g0042 445 SUPERFAMILY CRAL/TRIO domain 100 236 IPR036865 -
Lele39g0042 445 MobiDBLite consensus disorder prediction 1 21 - -
Lele39g0042 445 Gene3D - 314 378 IPR036812 -
Lele39g0042 445 SMART sec14_4 86 246 IPR001251 -
Lele39g0042 445 PANTHER PATELLIN-1 33 96 IPR044834 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele39g0042 Lele-ChrLele39 313153 318496 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0201 42 1651002 1653123 Lele39g0042 39 313153 318496 CCT
Lele43g1155 43 19937091 19939176 Lele39g0042 39 313153 318496 CCT
Lele44g1145 44 20087917 20089996 Lele39g0042 39 313153 318496 CCT
Lele41g0206 41 1656464 1659287 Lele39g0042 39 313153 318496 CCT
Lele37g1382 37 22615163 22617589 Lele39g0042 39 313153 318496 hybridization