Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1297 ATGTCTGCAAATTCTGAGGGCACTTCATCTGCATTAAATCGGCCTAATTCTCAGATTTTTGAGGACACTGCCCTGCTAGCTGAGCATTCTGCCCAGATTGCAGTATGTGCTCTCTGCCAAAAGGCCCTATCACCTGATATTGAGATGACGAATGATCTTGCACCAGTTGGTGTATGTGGTGATTGTAAATTTTTATTACTCGAAGATTTTGGGATCCATGCCCAAAACCCTCGAAGAGTGCATAGGGGAAGATCCACGTACAGCAGTTCTGAATCAATTGATAATGGTCTATCACATCAGCTCCCCAGTATGACTAATTCTGTGAGGCAAAATCAGTCCTCTGCATCTGTGGAGGATGATCAGCTTGTTGATGGTGATACCCCCTCTTGGTTATTGCAGTATGCTAGTACCCATACTACCCCTAGTGAGTCTCGAAGATGGAGGCGGGTGTTCTCTGATACTGATAGTGATGGTTTTGATAATTGGAGTTCTCTTTATGGTGAGAATGAATCAAATGTGAGTGTTAGTCGCTACAGAGTCCCCAATGGCGATATTGATTCCTTCTCTTTCAGTGCTTATGGAGGTGACTCTGAAGTATCTATGGATAGATATAGTTTTGTAGGTACAGGAATTTTAAATTTACCAGATGAGGGAGATGAGTTTAATAGTGAGACTGATATAGATCCGATGCATGCTGGCCTTAGCCATTGGAATTCTGATGATATGGAAGAGGAGGATGAAGATGAGGAGGATGGGGAAGAGGAGGAAGAGGAAAGAGCATGGGAAGTAGCTGAGGCTGAGGAAGCTGAAGCCACTGCCCGCCTTCAAATATTTTTTACCTCAAGTCCAAGTGAGAGAAGTGACCCCATTAATTGGGTCCCACAGTTTCATTTTCCTGAATCTGAGGAAATCTTAAGTAGGAGGATTAGGGATAGATGGCAAACTTACACTGATCACAGCTCCAATTACTTGGAGGAGTCTCATTCACCTCCATATGGTGCAAATTTTGGGGATTATCTTGATGCTAGACAATTTGAAGATCTGCTTGAGCATCTTGCTGAGAATGACAACTCAAGACGAGGAGCACCACCTGCAGCAGTGTCTTTTGTACATAGTCTGCCCCGTATTGTTATAAGCAAAGAACATGAGAAGCATGATGATCTTGTATGTGCCATTTGCAAGGATGCCTTGGCCACTAGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTTTATCATGCCGGCTGCATTTTGCCATGGTTGAGTGCACGAAATTCATGCCCCCTTTGTCGTTATGAGCTCCCAACAGATGATAAGGAGTATGAGGAAGGAAAGCGCAATATTGACATTAGAAATGAGATCCATGAAGTGCAGCAGCTAAATGTGATGGATGACAATTCTTCTGATGGAGCTGAAGCAAATGAAGAGGATGGTACTAATCAAGGTGGAGTACAGCAAAGTGAGCTTGTGAACATGGTTCCTGTACATAATCCTTCTGCAGCGAGTGGAGGTAGAGGAAGATGGTTTTTCTTTGCTGCTGCTCCAATTGTTAGTCTAGTGGGTATTGTTATTGTCTTATGGTTAGGCAACCCTCTAATTGAAGGTAGGAGACAATTGGGCTGCCACAACTTACAGGGGCAAAATCAGCATCAGGTTCATGTATCCACCCCACCCAACCATAGGGAGGATAGAAGCAGAAGATGGTGGTGTTTTTTCTAG 1719 0.4386 MSANSEGTSSALNRPNSQIFEDTALLAEHSAQIAVCALCQKALSPDIEMTNDLAPVGVCGDCKFLLLEDFGIHAQNPRRVHRGRSTYSSSESIDNGLSHQLPSMTNSVRQNQSSASVEDDQLVDGDTPSWLLQYASTHTTPSESRRWRRVFSDTDSDGFDNWSSLYGENESNVSVSRYRVPNGDIDSFSFSAYGGDSEVSMDRYSFVGTGILNLPDEGDEFNSETDIDPMHAGLSHWNSDDMEEEDEDEEDGEEEEEERAWEVAEAEEAEATARLQIFFTSSPSERSDPINWVPQFHFPESEEILSRRIRDRWQTYTDHSSNYLEESHSPPYGANFGDYLDARQFEDLLEHLAENDNSRRGAPPAAVSFVHSLPRIVISKEHEKHDDLVCAICKDALATSTEVNQLPCSHLYHAGCILPWLSARNSCPLCRYELPTDDKEYEEGKRNIDIRNEIHEVQQLNVMDDNSSDGAEANEEDGTNQGGVQQSELVNMVPVHNPSAASGGRGRWFFFAAAPIVSLVGIVIVLWLGNPLIEGRRQLGCHNLQGQNQHQVHVSTPPNHREDRSRRWWCFF 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1297 572 MobiDBLite consensus disorder prediction 81 120 - -
Lele38g1297 572 MobiDBLite consensus disorder prediction 80 120 - -
Lele38g1297 572 FunFam E3 ubiquitin-protein ligase RING1-like 351 437 - -
Lele38g1297 572 SMART ring_2 390 430 IPR001841 -
Lele38g1297 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 437 IPR013083 -
Lele38g1297 572 ProSiteProfiles Zinc finger RING-type profile. 390 431 IPR001841 -
Lele38g1297 572 SUPERFAMILY RING/U-box 373 437 - -
Lele38g1297 572 Pfam Ring finger domain 390 431 IPR001841 -
Lele38g1297 572 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 267 435 - -
Lele38g1297 572 MobiDBLite consensus disorder prediction 218 259 - -
Lele38g1297 572 MobiDBLite consensus disorder prediction 240 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1297 Lele-ChrLele38 23681051 23682769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1297 26 572 C3H Transcription Factor Family AT5G01980 40.787 3.24e-119 360