Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1293 ATGAAACTAATTGGCATGGCCCGGGCAACATCAGACCATGCCTTCAATGCTACAATATGGGATGTCCTCGTTGATCCTAGCTATCAGGGCCAAGGCCTTGGGAAAGCTCTTGTGGAGAAATTGATTCGGGCTCTTCTGCAAAGAGACATCGGAAATATAACTCTATTTGCAGATAGTAAAGTTGTGGAATTTTATCGCAATTTAGGTTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTTTGGTACCCTAAGTACTAA 261 0.433 MKLIGMARATSDHAFNATIWDVLVDPSYQGQGLGKALVEKLIRALLQRDIGNITLFADSKVVEFYRNLGFEADPEGIKGMFWYPKY 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1293 86 CDD NAT_SF 2 55 - -
Lele38g1293 86 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1 86 IPR000182 GO:0016747
Lele38g1293 86 PANTHER ACYL-COA N-ACYLTRANSFERASE 2 84 IPR045039 GO:0008080
Lele38g1293 86 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 2 75 IPR016181 -
Lele38g1293 86 Pfam Acetyltransferase (GNAT) family 2 70 IPR000182 GO:0016747
Lele38g1293 86 Gene3D - 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1293 Lele-ChrLele38 23665016 23665979 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele38g1293 Acetyltransf_1 3.4e-14 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0290 42 2464978 2465562 Lele38g1293 38 23665016 23665979 CCT
Lele43g1075 43 19212805 19213392 Lele38g1293 38 23665016 23665979 CCT
Lele44g1059 44 19303179 19303763 Lele38g1293 38 23665016 23665979 CCT
Lele41g0294 41 2406197 2406838 Lele38g1293 38 23665016 23665979 CCT
Lele38g1293 38 23665016 23665979 Lele39g0007 39 69341 72073 hybridization
Lele38g1293 38 23665016 23665979 Lele40g1241 40 22162877 22166820 hybridization