Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1278 ATGCAGACCTGCAGACGGCAATGCTCATGGAGGATCTTCGTTCGAGCTAAGGCCAACAATTTGAATTTCACCTTCAGATTCAGAGCCACCAGTTTCGGACGCAATTGGACCCTCCATCGCTTCTCTTTCATCCTCAAGTTTCGCAAATTCTTCGTCTTCCGCCTCAATTCACGTCGCCCTGGGCAAAACGCTCCCCGATCGCGCCTACGGCTCATCCGAGCCAGAGTCCTCGATGTGATCCAGAAATTTCAATCCCGAATCACCGCGAAGAACCTAGCCACTTCTGGCAATAGAGGATGGATTGATGAACAGCCAAAGAATGGGAATGTATGTGGCAAAGCGAGTTTGGGAGCTGATCTCTTGATTTATTTGACTACTGCTCGTCGGGCCTACCTTTCCTCTTTCAGACCATCTTTCTCTGTCTACATTTTCATTGTTCTCTCTTGTCCTCTCCCCAAAATCATCACTTCTCGGCCTTTGCCATCTGATTTATTTGACTCGATAAGGGGTTCTTCTTCCGAGAATCGAAACCACAAGTTTCAGTTTTCCCCACTTTTGCCTCCCGCATTTGGTTCATTAGTAGAAAGCATGTTGCACGCTTGCAATTTCCCCCCCGGTAGATTTGCCAATATGATGGGAAAATCTGATTTTATACAACAGACAAGCTCTGGGGACAGGATGGGGTGTTTTACAGTCTTGAAGAGTAAGAAGAAGAAGTCCGAACAGATCAAGAATGTGAAACGGGTCAACCATAAAGAAAATTTACCTGCAGCAGTACTACCTGAACCTCAAACTCATACGCGCTCACTGCAGTCTGCACCTCCTAGTTTTAGGACCAGAGTGAAACCCATCCAACCCATTAATAACATCACCTACAGTAGAATACGAGCATTATCTGCTCCATCAACTCTTGATGCAGCTGAACAAGATGCTTTGTCATCTGTTGGGTATGAGGAACAAGATGAGTCAAAATACCGGGCTGGATCAATAAAGGAGCAGCGTTCATCCAGTCCACAACCTTTACCTCTCCCATGTCCTCAGTCTTGTGGTTCATTAAAGGCAACAAGTAGCTTTAAGTCAGGCACAGCTAGTGGTCCCCTCCATGCTTCGGGTCCTTTGCCACTTCCACCTACTGGATCACTTCGAAACTTTACATATGAAGAAATTTCTGCTGCTTGCCACAGTTTCTCTTCAGATCGGTGCATGTCAGAAGGTCTTTCTTCCACCATATTTAAAGCTTCTTTCGGTGATGAGGCTTCAAGCTCGAAGAAGTTTGAAGCCATTGTCTCTCGCCTTCATCCATCTGCTCAGGGCTTAAAGGAATTCGTGAATGAGGTTAATATCATTGCATCTTTGCAACACCCACACTTTTGTAAATTGCTTGGTTTTCATGCATGTGAGGGTTCAGAGCAGAGAATGTTGGCTTATGAGAGGCTATATCATGGAAGCTTGGACCGCCTGTTGCATGGGAGATCTGATGGGCCACCTATTGATTGGAATACAAGGATGAAAATTGCTTTATGTGCTGCACAAGGTCTCGCTTTCTTGCATGAAGAAGGGCCTTTCCAGGCAATGTATAATGAATTTTCAACCGCTAATATTCAGATTGACAAAGATTTTAGTGCAAAGCTTTCAGGTTATGGTTGTGTTGGAGATATTCCTGAGGAAGAGGTTTCCAGCAATTCAACGGCTGTTGGAAACTTATCTGTAGAGACTCTGGAAAGAGGAATGCTCACTCCAAAGAGCAACGTTTGGAGCTTTGGAATTGTTCTTCTGGAGTTACTTACTGGAAGAAAGAATCTCGACAGCCGTCACACCAAAGAAGAGAGGAACTTAGTGAAGTGGAGTCGACCTTTCCTTGCAGATGATTGTCGACTGTCATTGATCATGGATCCTCAACTTAAAGGCCGGTTTCCTTCCAAAGCAGTGAGGACAGTATCTGACATTGCACTGAGGTGCCTTCAAAATGAGCCATCAGAGAGACCCACCATGAGAACTGTGGTTGACCATCTCAGAAAAATACAGGATATAAAGCACTCTTGTCGGTTTCCGCTGCAAGAGCCTGCGGCAATTTCCAGAAAACAGATGTCAAGTGTGATGCAGAAGGTGACAGGAAAGAAACATTGCAGGTTATCAATAGGGAAGCGGCACCGGGAGGGATCCAGGATTTACTCCTTAACAAGCAACGACATCAAAGTGGGTACTAACATTGAAGTTGATGGTGCTCCTTGGCGCGTGTTGGAGTTTCTTCACGTCAAACCTGGTAAAGGAGCGGCTTTTGTGAGGACCAAAATGCGAAATTATATTACAGGGAACACTGTGGAGAAAACATTTCGAGCTGGGAGTTCGATATCACTGCTTAGTGAGCTTTGGTATCAGAGGAATACATTTGAGGAGATTCGTCTCTTAGAATCAGAAGTTGGAGGCAGGAAGAAATGGCTGAAAGAGGGAATGGACTGCAATTTGCTGTTATGGAATGGAAAAGTAATTGATCTTGAACTTCCCATCACGGTAAAACTCCCTGTAGTTGATGTGGATCCAGGACTTAAGGGTGACACTGCCCAAGGGGGATCAAAGCCTGCAACTCTTGACACTGGCGCTGTTGTGAACGTCCCACTCTTCATAAACACAGGCGACGAGATATTGGTGGACACAAGAACTGGGCAGTACATGAGTCGTGCTTAA 2685 0.454 MQTCRRQCSWRIFVRAKANNLNFTFRFRATSFGRNWTLHRFSFILKFRKFFVFRLNSRRPGQNAPRSRLRLIRARVLDVIQKFQSRITAKNLATSGNRGWIDEQPKNGNVCGKASLGADLLIYLTTARRAYLSSFRPSFSVYIFIVLSCPLPKIITSRPLPSDLFDSIRGSSSENRNHKFQFSPLLPPAFGSLVESMLHACNFPPGRFANMMGKSDFIQQTSSGDRMGCFTVLKSKKKKSEQIKNVKRVNHKENLPAAVLPEPQTHTRSLQSAPPSFRTRVKPIQPINNITYSRIRALSAPSTLDAAEQDALSSVGYEEQDESKYRAGSIKEQRSSSPQPLPLPCPQSCGSLKATSSFKSGTASGPLHASGPLPLPPTGSLRNFTYEEISAACHSFSSDRCMSEGLSSTIFKASFGDEASSSKKFEAIVSRLHPSAQGLKEFVNEVNIIASLQHPHFCKLLGFHACEGSEQRMLAYERLYHGSLDRLLHGRSDGPPIDWNTRMKIALCAAQGLAFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGDIPEEEVSSNSTAVGNLSVETLERGMLTPKSNVWSFGIVLLELLTGRKNLDSRHTKEERNLVKWSRPFLADDCRLSLIMDPQLKGRFPSKAVRTVSDIALRCLQNEPSERPTMRTVVDHLRKIQDIKHSCRFPLQEPAAISRKQMSSVMQKVTGKKHCRLSIGKRHREGSRIYSLTSNDIKVGTNIEVDGAPWRVLEFLHVKPGKGAAFVRTKMRNYITGNTVEKTFRAGSSISLLSELWYQRNTFEEIRLLESEVGGRKKWLKEGMDCNLLLWNGKVIDLELPITVKLPVVDVDPGLKGDTAQGGSKPATLDTGAVVNVPLFINTGDEILVDTRTGQYMSRA 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1278 894 Pfam Elongation factor P (EF-P) OB domain 795 830 IPR001059 GO:0003746|GO:0006414
Lele38g1278 894 SMART Elong_fact_P_C_2 838 893 IPR015365 GO:0005737|GO:0043043
Lele38g1278 894 CDD S1_EF-P_repeat_2 838 893 IPR015365 GO:0005737|GO:0043043
Lele38g1278 894 Hamap Elongation factor P [efp]. 725 894 IPR011768 GO:0003746|GO:0005737|GO:0006414
Lele38g1278 894 SUPERFAMILY Translation proteins SH3-like domain 727 785 IPR008991 -
Lele38g1278 894 SUPERFAMILY Nucleic acid-binding proteins 837 894 IPR012340 -
Lele38g1278 894 Gene3D Phosphorylase Kinase; domain 1 377 477 - -
Lele38g1278 894 MobiDBLite consensus disorder prediction 255 282 - -
Lele38g1278 894 PANTHER OS01G0588500 PROTEIN-RELATED 324 675 - -
Lele38g1278 894 MobiDBLite consensus disorder prediction 264 282 - -
Lele38g1278 894 Gene3D - 837 894 IPR012340 -
Lele38g1278 894 Gene3D Transferase(Phosphotransferase) domain 1 479 687 - -
Lele38g1278 894 SMART EFP_2 795 830 IPR001059 GO:0003746|GO:0006414
Lele38g1278 894 FunFam Elongation factor P 837 894 - -
Lele38g1278 894 ProSitePatterns Elongation factor P signature. 859 878 IPR013852 -
Lele38g1278 894 Pfam Protein tyrosine and serine/threonine kinase 401 671 IPR001245 GO:0004672|GO:0006468
Lele38g1278 894 Pfam Elongation factor P (EF-P) KOW-like domain 728 783 IPR013185 -
Lele38g1278 894 SUPERFAMILY Nucleic acid-binding proteins 794 835 IPR012340 -
Lele38g1278 894 MobiDBLite consensus disorder prediction 311 346 - -
Lele38g1278 894 ProSiteProfiles Protein kinase domain profile. 396 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele38g1278 894 Gene3D - 716 786 IPR014722 -
Lele38g1278 894 Pfam Elongation factor P, C-terminal 838 893 IPR015365 GO:0005737|GO:0043043
Lele38g1278 894 SUPERFAMILY Protein kinase-like (PK-like) 374 681 IPR011009 -
Lele38g1278 894 Gene3D - 791 835 IPR012340 -
Lele38g1278 894 FunFam Organellar elongation factor P 720 786 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1278 Lele-ChrLele38 23570712 23581862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1278 375 677 Receptor kinase-like Gene Family AT4G02010 37.338 5.85e-55 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Lele38g1278 PK_Tyr_Ser-Thr 9.3e-25 CL0016