Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1233 ATGGATACTATTCCCTTGGCTTACCGAGAGCACCTCCCTGCTGCTCCTGGTTGGCTAAACAAAGGGGATAACGGGTGGCAGTTGACAGCAGCTACCCTAGTGGGAATCCAGAGCATGCCAGGGCTTGTGATTCTGTATGCGAGCATCGTCAAGAAGAAATGGGCTGTTAACTCTGCTTTCATGGCTCTCTATGCCTTCGCTGCTGTTCTCATCTGTTGGGTCCTTGTTGGTTTCAGAATGGCCTTTGGAGACGAACTTCTTCCCTTCTGGGGTAAGGGTGCCCCAGCTTTAGGCCAAGAGTTCCTCATAAAACGAGCCAAGGTCCCTGAAAGTACTCACTTCTACAGCAATGGCACTTTAGAAACCCCAACCGTAGAGCCATTTTTTCCCATGGCTTCGCTTGTGTACTTTCAATTCACTTTTGCTGCTATAACGCTTATCTTGCTAGCTGGTTCGGTTCTTGGTCGCATGAACATTAAGGCCTGGATGGCTTTTGTCCCTCTTTGGCTCATTTTCTCATACACAGTAGGGGCATTCAGCTTATGGGGCGGTGGCTTCCTCTACCAGTGGGGCGTCATCGATTACTCCGGCGGCTACGTTATCCACCTCTCCTCCGGAATCGCCGGCTTCACCGCCGCATACTGGGTGGGACCGAGGCTGAAGAGCGACAGGGAGAGGTTTCCACCGAACAATGTGTTGCTGATGCTTGCGGGATCGGGACTCCTATGGATGGGGTGGTCGGGGTTCAACGGCGGAGCTCCGTACGCGGCGACCGTTGACTCGTCGATAGCAGTGTTGAACACGAATATATGCGCGGCGACGAGCCTTTTGGTATGGACGTCACTGGACGTCGTCTTCTTCGGGAAGCCTTCGGTGATCGGAGCCGTTCAGGGCATGATGACCGGACTTGTCTGCATCACCCCCGGAGCAGGTTTGGTGCAATCGTGGGCGGCTATAGTAATGGGAATCCTGTCAGGCAGCTTTCCATGGTTCACAATGATGATCCTTCACAAAAAATCTTCTCTCCTTCAACAGGTGGATGACACGCTGGGAGTATTTCACACACACGCTGTAGCGGGGCTTATGGGTGGCCTCCTAACTGGTCTGTTGGCGGAACCACAGCTTTGTCGGCTGACTTTGCCTGTAACCAACTCGAGAGGCGCCTTTTATGGCGGCAGTGGCGGCATGCAATTCGTGAAGCAGATTGTGGCAGCCCTATTTGTGACAGGATGGAACTTGGTGTCCACCACACTCATTCTTCTGGCCATTCGTCTGTTTATACCGTTAAGGATGCCGGATGAGCAGCTCAAGATCGGTGATGACGCCGTACACGGTGAAGAAGCCTATGCACTTTGGGGCGACGGAGAGAGATATGAACCTAACCAGCATGGCTCCTCAGACATTCATGCTTCTACAGTTTCTCCTTATGTGACTGGTGCAAGAGGCGTCACCATCAATTTATAG 1464 0.526 MDTIPLAYREHLPAAPGWLNKGDNGWQLTAATLVGIQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLVGFRMAFGDELLPFWGKGAPALGQEFLIKRAKVPESTHFYSNGTLETPTVEPFFPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGSGLLWMGWSGFNGGAPYAATVDSSIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSFPWFTMMILHKKSSLLQQVDDTLGVFHTHAVAGLMGGLLTGLLAEPQLCRLTLPVTNSRGAFYGGSGGMQFVKQIVAALFVTGWNLVSTTLILLAIRLFIPLRMPDEQLKIGDDAVHGEEAYALWGDGERYEPNQHGSSDIHASTVSPYVTGARGVTINL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1233 487 PANTHER AMMONIUM TRANSPORTER MEP2 13 460 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lele38g1233 487 Pfam Ammonium Transporter Family 26 449 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lele38g1233 487 FunFam Ammonium transporter 7 452 - -
Lele38g1233 487 PRINTS Rhesus blood group protein signature 233 251 IPR002229 GO:0005886
Lele38g1233 487 PRINTS Rhesus blood group protein signature 357 373 IPR002229 GO:0005886
Lele38g1233 487 PRINTS Rhesus blood group protein signature 264 286 IPR002229 GO:0005886
Lele38g1233 487 PRINTS Rhesus blood group protein signature 138 154 IPR002229 GO:0005886
Lele38g1233 487 TIGRFAM amt: ammonium transporter 23 449 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lele38g1233 487 ProSitePatterns Ammonium transporters signature. 194 219 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lele38g1233 487 SUPERFAMILY Ammonium transporter 18 431 - -
Lele38g1233 487 Gene3D Ammonium transporter AmtB like domains 7 452 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1233 Lele-ChrLele38 23251033 23254249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1233 131 487 Inorganic Solute Cotransporters AT2G38290 75.556 0.0 539