Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1229 ATGTTGGAGCTCTGTGAATTCGTTTCCAGTGTCGCAGACATGTCTTACTACTTCCCTCAAGAAATCCTTGAGGAAATTCTTCACAGATTGCCTCTCAAATCTCTTGTGAACTGCATCTCTGTCTGCAAATCCTGGAAGTCTCTCATCTCAGATCATTCCTTCATATGTGACCACCTCAACCGTACGATTCAAGCCAACCCAGATATTGCCTCCCTCTTCCTCTTCATCTCTCTTAAGAAACGGGTACAGGGATACAAGTACTACGAATCCCAAGATTTTTACTCTCTTTATTCTGATAATCACCAAAGTGAAGATGACCCCTCCTCTGTTTTGAAATCATCTCTCATTCCTCTGTTCATGAGTGAGCACAAGGAAGTAGTTGGAACTTGCAATGGACTGGTATGTCTCGCTGATTATTCTGTATTAGATACTGCAGAACTCGTTATTTGGAACCCATGTATTCAGAAATATGTGGTTCTTCCCAAACCCAGTACAAGCTTCAGATTCTGCGACCCTGACCATAAAAGGAACAGAGTTTTCTTTGGATTTGGTTTTGATTCAAAGACCAAGGATTTCAAAGTTGTCAGACTTGTTGCAACTATCAACAACAGAGAAGAAACTCCTCAAGTTGAGGTTTACTCTCTTGCATCTGGTTCATGGAGGAACATCGCTGGTAAAGCTCCCCCAATTCTGCTGTGTATGCAAGTATTGTGGAAGAATCAGGTGTTCATAAATGGTGTAATTCATTGGGTTGTGAGCCAAAGAAGAAATGGTAAGATTCATAATTTCATTTTAACATTCGATGTTGTTGAAGAAGAATTTGGAGAATTGATGTTACCACAACCTCTGAGGGAGTCTCCTTTCCAATTGTCAATTTTGGCAGCAGAGGATTCACTTGCTGTGGTTCATACTTATTGCTCAGAGGTGTATGAAGAATTTATTAGCATCTGGGTGATGAAAGAATCATGGAGTGAAGTGTTTCATTCTGATTCAAGACGTTATGGGGGCATATCAAGCGTTTTAGCCATTAGAAATAGTGGAGAATTGGTGCTGAGAATTTATGGAGGAGTGATGATACAGCTAGATCCAGTGAAAGAATCAGTGAAGGATCTTGGACCAAGGGATTTTGTCCACGCTTTTGCTGGATTTCATGTGGAGACTCTGTTTTTAATAAACGAAGAACAGGGTCTACAGAATACCAAATTGCTTTTGCGAATTCAATTCCCACAGGAACTGTTTGATTGGGCTCGCAATTATGTAATATCAACCAAGAGAAAGGATCTTTTTGTCCTGAACTTGGAGTCAAATCCAAAACTGAAAACTGATGATCTTAAAGCTAGAGTTTTGAACTTGATTATTGCTGAAGGTGCATGTGTGCAGAATGTATTGGATTCCGTTATATCTGCGCTACTGGAGGATAAGAATCGCAAGTTCATCTATGTTGAGATGGTAAAACACTTTTGGCACTGGCTTAAATTCTTAATTCAAAATGTTGGAACTTTAGAAAGAAATGGGGGTATGTGTATGCATGATGAGGCCACCCCGCATTATATTGATCTGATTGATCAGACAACTCTGGGGCATCAATTCATCAAAGAGGAATTTGGTAAGATTCCAAGAGTTGGCTGGCAGATTGATCCTTTTGGCCATTCTGCAGTTCAGGCTTATATGCTTGGTGCCGAGGATATCATTAAAAATGGAAAAGCAGGAAATAAAGTTCAGTGTCTCAGCAGTGCAGCTGGAGCATTGAAGGATGGAAAGAATGTATTTATTGACAGGTGCAATCTTGATAGAGAACAGCGTTCAGGATTCGCAGAGCTTCAGAAGAAAGAGCTGCCTACATTAAGTGAAGGGTTTAACCGGATAACATTTTGTCAGATTGAGAGTGATGTCAAAGTGGCCATTAACACGTACAGTGCACTTGGGCCACTGGATAACCTTTCACATGGATGTTTTGGCCAGAAAAGTAAAGATCCCAAAGTTCAAGTGGATATAATGAAGTTCTTCAAAAAGGCCGAGGTCTCAGTTGTTGCTGAGTCTAAAGAGAATTGCAGTGGAAATTTTGCTTCTCAAAGTAATGAGATGATAGACCCCTGCCGAGGCTTGCACTGTGCTGTTATAGCTAATGCTGCGAACTGGCAATTGAAACCTGGAGGTGGAGGGGTTAATGCTGCAATTTTCAAGGCTGCAGGTCCTGTCTTGGAGTCTGCGACCAAAGAACGAGCACATCAATTGCTTTTGCCTGGGAATGCTGTTGTGCTGAGTGCTGATCATGGATCTGAAAAAGGCAAGAAATACAAGGGAAGTCAGGATGATGATGAAGTTAACTGTACTGGTACCAAGGTTGTAAACATAGATTCAAGTAATAAAAAAAGTGATGGCAGCTTGAATAAGACACGGATATCATGGGCTCAAGCTCTACATCAAATAGCTATGCATCCTGTGAAGCATAAGGATGAATTGCTTGAAATATCCAAAGATGTAGTTGTGCTGAATGATCTGTTTCCTAAGGCACAGAAGCACGTTTTGGTGTTGGCACGATCTAGAGGCCATGATTACCTGGCTGATGTTCAAAATGACCACCTTCACTTGCTAAAGAGGATGCGTGCTGTGGGTCTAAAGTGGGCCGGGAAGTTCTTACATGAGAATGCTTCATTAGTTTTTCGTCTTGAATATCACTCGGAATGCAGTGTATTTGTTTATGAGCAGTTGCTCCATCAATGCGACAACTTCATTTACATGTTATTAGCCAGGACTTTGACTCAAAAACATTTTAAAAACAAGAAGCACTGGAACTCGTTCAACACAGATTTCTTTCGTGACACAGTAGATATAATTGATGAGGTCTCTAATAATGGGAAAGCAACCTTGAGAGATTATGACAAGTTGCTGTCCATGGAGTTGAGGTCCTATAGATGTAGAAGTGCACACCCTAACATTCCCAGGTTAAAATCTCATATTAACAGCTGTCAAGCTTCCTTTCCTGCTTTCTTGCTTCAAAATGGTCGTTTGGTTCGCGCACAAGGAGTATTTGTGGCTCATAAAAGAGACTTGGTCAGACATGGGCAAATTCCAATTGAGATCTCTTGGTTAACAAGGTTGGTTTCTCTTGATCTCTCTACCTCAATCCACACTCTAAAGCTTGAGTGCCCAAATATAGCAAATCTTCTGCAGAACCTTACAGAAATCACAGCATTGTACATGGATGGTGTAAGGATATTGGCTGAGGGAAAGGAATGGGGCCATGCTCTTTCTTCACTAAGAAATCTTCAAACTTTGAGTTTGTCGTCCTGCAATCTCTCTGGGCCTATTGATTCTTCACTTTCAAAGCTTCAGTCCCTCCTAGTACTTAGACTGAATCAAAACAACTTGGCTTGCTCATTGCCAGAGTCCTTTGTGAGTTTGACAAATTTAACCACCTTGCTACTCAACAGTTGCAACTTGAGTGGAGTGTTTCCCAGAAAAATCTTCCAAATACCAAACTTACAAGTCATTGACGTATCCAATAACCATGATCTCCATGGTTCTTTACCAAAGATTCCACATCATGGATCTTTCAACACCTTGAACCTTAACCATGCAAGTTTCTCGGGGCAATTGCCATATTCTATTCACAGATTGAGGAACTTATCTACCTTGGATCTATCAAGCTGCCAATTCAATGGAATGCTTCCTAGTTTAATGTCAAATCTCACCCAACTTGGCCCTGACAATCTCATTAGCATTGATTTTGTTGGAAATCCCTTCTATGCGAGAGTTCCGACATCTCTTTTTTCACTTCCATCTCTAGAAAATTTTGAAGTGAAAAAAGAGGATGGAAAATTTGGAAATACTGGATCTTAG 3843 0.4072 MLELCEFVSSVADMSYYFPQEILEEILHRLPLKSLVNCISVCKSWKSLISDHSFICDHLNRTIQANPDIASLFLFISLKKRVQGYKYYESQDFYSLYSDNHQSEDDPSSVLKSSLIPLFMSEHKEVVGTCNGLVCLADYSVLDTAELVIWNPCIQKYVVLPKPSTSFRFCDPDHKRNRVFFGFGFDSKTKDFKVVRLVATINNREETPQVEVYSLASGSWRNIAGKAPPILLCMQVLWKNQVFINGVIHWVVSQRRNGKIHNFILTFDVVEEEFGELMLPQPLRESPFQLSILAAEDSLAVVHTYCSEVYEEFISIWVMKESWSEVFHSDSRRYGGISSVLAIRNSGELVLRIYGGVMIQLDPVKESVKDLGPRDFVHAFAGFHVETLFLINEEQGLQNTKLLLRIQFPQELFDWARNYVISTKRKDLFVLNLESNPKLKTDDLKARVLNLIIAEGACVQNVLDSVISALLEDKNRKFIYVEMVKHFWHWLKFLIQNVGTLERNGGMCMHDEATPHYIDLIDQTTLGHQFIKEEFGKIPRVGWQIDPFGHSAVQAYMLGAEDIIKNGKAGNKVQCLSSAAGALKDGKNVFIDRCNLDREQRSGFAELQKKELPTLSEGFNRITFCQIESDVKVAINTYSALGPLDNLSHGCFGQKSKDPKVQVDIMKFFKKAEVSVVAESKENCSGNFASQSNEMIDPCRGLHCAVIANAANWQLKPGGGGVNAAIFKAAGPVLESATKERAHQLLLPGNAVVLSADHGSEKGKKYKGSQDDDEVNCTGTKVVNIDSSNKKSDGSLNKTRISWAQALHQIAMHPVKHKDELLEISKDVVVLNDLFPKAQKHVLVLARSRGHDYLADVQNDHLHLLKRMRAVGLKWAGKFLHENASLVFRLEYHSECSVFVYEQLLHQCDNFIYMLLARTLTQKHFKNKKHWNSFNTDFFRDTVDIIDEVSNNGKATLRDYDKLLSMELRSYRCRSAHPNIPRLKSHINSCQASFPAFLLQNGRLVRAQGVFVAHKRDLVRHGQIPIEISWLTRLVSLDLSTSIHTLKLECPNIANLLQNLTEITALYMDGVRILAEGKEWGHALSSLRNLQTLSLSSCNLSGPIDSSLSKLQSLLVLRLNQNNLACSLPESFVSLTNLTTLLLNSCNLSGVFPRKIFQIPNLQVIDVSNNHDLHGSLPKIPHHGSFNTLNLNHASFSGQLPYSIHRLRNLSTLDLSSCQFNGMLPSLMSNLTQLGPDNLISIDFVGNPFYARVPTSLFSLPSLENFEVKKEDGKFGNTGS 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1229 1280 SUPERFAMILY Glycoside hydrolase/deacetylase 457 558 IPR011330 GO:0005975
Lele38g1229 1280 Pfam Scavenger mRNA decapping enzyme C-term binding 814 898 - -
Lele38g1229 1280 SUPERFAMILY L domain-like 1028 1266 - -
Lele38g1229 1280 Gene3D Leucine Aminopeptidase, subunit E, domain 1 661 760 IPR043472 -
Lele38g1229 1280 SUPERFAMILY Macro domain-like 702 756 IPR043472 -
Lele38g1229 1280 Gene3D Ribonuclease Inhibitor 1015 1272 IPR032675 -
Lele38g1229 1280 SUPERFAMILY F-box domain 14 100 IPR036047 GO:0005515
Lele38g1229 1280 Pfam F-box associated 242 332 IPR006527 -
Lele38g1229 1280 Gene3D - 798 990 IPR036265 -
Lele38g1229 1280 ProSiteProfiles F-box domain profile. 12 63 IPR001810 GO:0005515
Lele38g1229 1280 Pfam Leucine rich repeat 1088 1148 IPR001611 GO:0005515
Lele38g1229 1280 SUPERFAMILY HIT-like 826 973 IPR036265 -
Lele38g1229 1280 PANTHER APRATAXIN-RELATED 778 990 - -
Lele38g1229 1280 Pfam Glycosyl hydrolases family 38 N-terminal domain 457 559 IPR000602 GO:0004559|GO:0006013
Lele38g1229 1280 Gene3D Glycoside hydrolase 38, N terminal domain 453 563 IPR027291 -
Lele38g1229 1280 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1081 1177 - -
Lele38g1229 1280 Pfam F-box domain 19 56 IPR001810 GO:0005515
Lele38g1229 1280 Gene3D - 17 54 - -
Lele38g1229 1280 SMART fbox_2 18 58 IPR001810 GO:0005515
Lele38g1229 1280 TIGRFAM F_box_assoc_1: F-box protein interaction domain 128 334 IPR017451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1229 Lele-ChrLele38 23217674 23229782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1229 701 754 C2H2 Transcription Factor Family AT5G01310 77.778 4.57e-18 88.2