Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1212 ATGGAGGGCCATCATCCTCATCCTCATCCTCATCATCCTCTTCATCTTCATCGTCAGCAACCTCAGCAACATCATCATCATCATCAGCAGCAGCAGCAACATAGTATTGGGGGTGTTACGGCGGCGGTTAACTTTGTTGATGTCGGAGACAGGTTTCCTCAGTGGAGTATTCAAGAAACGCAGGAGTTCTTGACGATGAGGGCAGAGCTGGATCAGGCTTTTATGGAGACGAAGAGGAACAAGCAGTTATGGGAAGTTATTTCCATCAGGATGAAGGAAAAGGGTTACCTTAGAAGCCCAGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTCACCAGGTACAAGGGGTGTGAAACAAGGGAGGCAGACGCTCTGAGGCAGCACTTCCCATTTTACAATGAGCTTCAGTTGATTTTCGCGAGTAGGATGCAGAGAATGCTGTGGGCAGAAGCCGAAGGAGGAGCCGGCGGCGGATCGAAGAAGAAGGCGCTGGAGAATCTCTCATCAGAAGATGAAGAAGAAGAAGAGGACAATAACAACAACAAAGAAGAGAGTGAAGGAGATCAGAAAGGTACAACGAGTAGAAGCAGAAAGAAGAAGAAGAAGGGAATTAAGGGTAGTAGTAGTGGTAATTATAGTAGTATTAATGAGAGTTTGAAGAACATGAAGGAGATATTGCAGGAGTTTATGAGACAACAGATGCAAATGGAGGCACAGTGGATGGAAGCTTATGAAGCGAGAGAGAAGGAGAGAAGAGTGAAGGAGCTTGAATGGAGACAAACAATGGAGGCATTGGAGAATGAGAAGATAATGATGGATCAGAGATGGAGAGAGAGAGAAGATCAACGAAGGCTTAGAGAAGAAGGTAGGGCTGAGAAAAGAGATGCTCTTGTCACTGATCTTCTAAACAAGCTCTCAAGAGAAGACATGTAG 933 0.4577 MEGHHPHPHPHHPLHLHRQQPQQHHHHHQQQQQHSIGGVTAAVNFVDVGDRFPQWSIQETQEFLTMRAELDQAFMETKRNKQLWEVISIRMKEKGYLRSPEQCKCKWKNLVTRYKGCETREADALRQHFPFYNELQLIFASRMQRMLWAEAEGGAGGGSKKKALENLSSEDEEEEEDNNNNKEESEGDQKGTTSRSRKKKKKGIKGSSSGNYSSINESLKNMKEILQEFMRQQMQMEAQWMEAYEAREKERRVKELEWRQTMEALENEKIMMDQRWREREDQRRLREEGRAEKRDALVTDLLNKLSREDM 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1212 310 MobiDBLite consensus disorder prediction 153 215 - -
Lele38g1212 310 MobiDBLite consensus disorder prediction 1 35 - -
Lele38g1212 310 Gene3D - 55 116 - -
Lele38g1212 310 PANTHER FI21293P1 9 306 - -
Lele38g1212 310 Coils Coil 212 239 - -
Lele38g1212 310 Pfam Myb/SANT-like DNA-binding domain 54 136 IPR044822 -
Lele38g1212 310 Coils Coil 164 184 - -
Lele38g1212 310 MobiDBLite consensus disorder prediction 8 31 - -
Lele38g1212 310 FunFam Zinc finger and SCAN domain-containing 20 55 116 - -
Lele38g1212 310 ProSiteProfiles Myb-like domain profile. 55 111 IPR001005 -
Lele38g1212 310 CDD GT1 53 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1212 Lele-ChrLele38 23106009 23107486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1212 25 308 Trihelix Transcription Factor Family AT2G38250 52.817 7.78e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele38g1212 Myb_DNA-bind_4 4.4e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g1212 38 23106009 23107486 Lele39g0093 39 630173 631603 hybridization
Lele38g1212 38 23106009 23107486 Lele40g1151 40 21586069 21587557 hybridization