Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1207 ATGGCTTCTAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCAGGAGTTGTTCGTGCTTTAACTCAAGATGTTGATGAATTTTATGGGCTCTGTGATCCAGATAAGGAGAACTTGTGCCTTTATGGACATCCAAACGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCTGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGCACCGCAGGGACTGGCTTTCTCTGGTTGCTGTCCACAGTGATTCATGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCCCGTCTTAATCGCAATGAAAGGAAACGGTTATTCAGCTTGATCAATGATCTTCCCACTGTTTTTGAAGTTGTGACTGAGAGTAAACCGTTAAAGGACAAGCCCACTGTGGACAGTGGTAGCAAATCTCGGGGCAGCACCAAGAGATCGAATGACGGCCAAGTGAAAAGCAACCCAAAGTTTGCCGATGAAGGTTACGAGGAGGAGGAAGATGAGCATAGCGAAACCCTTTGTGGTAGCTGTGGTGGAAATTATAATGCAGATGAATTTTGGATTGGCTGCGATATCTGCGAGAGATGGTTCCACGGGAAATGTGTGAAAATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGCCCATCGTGCATGAGGCGAGACGATGATTACAAATTCAACCAGTTGGCATTGGGACAACTAAAGACAGTGGGTAGAATTCATAGTGGGCATCGCCAAGCTTATGTTTTTGTCGTTTCTTTGTCTCTCTCTCTCTCTATAATGCTTGTAAGAGTGATACAATTAATGCCTTCATCATCAATAATGTCATCAGAAGCTATGGGTTCCAATCGCTCTCCTTCTTCTGATGCCTCTGCAAAAGAACGCCTGCGTTGGACTCAGCAACTTCACGTTCTCTTCGTTGAAGCTGTCAACAGACTTGGTGGCCCTGATAGAGCAACACCGAAGAGTATAGTGAAGGAGATGACGAGTATGGGAGTATCTGGAATCACCATTTATCACGTCAAAAGCCACTTGCAGCTAAAGGAAGTTCTACACGTTCAAATGGAAGTACAAAAACGCTTGAGCGATCAACTAGAGGTTCAAAGGAGCTTGAAGCTAAAAATGGAAGCTCAAGGGAAGTACTTAGAGAGACTTGGCCAAAGTTATCAAAACCAAACCATCTCCAGAAAACCTGCTGCTGGGAATAAGCTTCATATGAATACTTCCCCTACGACATCAATGCCTTGTCTTTCTGAGGAATCCGATGATTCCAACGTTAATGTCGCACACAAAAAGCAAAGAGTCGTTATCAACGGTGATACTATTAGGGTTAATTTCCCAACTTCTTCTTCTTCTTCATCTTCATCGCCCACTCCAGAATTCTGCAACCAAAACTGGGACCTACTTCCTTGGAACCAGCTCTCAGCTTCATTTCAATGTCAATCGCCTTTGGTTCCAAGCTTCTTGTTGTGA 1512 0.4451 MASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMHRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTESKPLKDKPTVDSGSKSRGSTKRSNDGQVKSNPKFADEGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCMRRDDDYKFNQLALGQLKTVGRIHSGHRQAYVFVVSLSLSLSIMLVRVIQLMPSSSIMSSEAMGSNRSPSSDASAKERLRWTQQLHVLFVEAVNRLGGPDRATPKSIVKEMTSMGVSGITIYHVKSHLQLKEVLHVQMEVQKRLSDQLEVQRSLKLKMEAQGKYLERLGQSYQNQTISRKPAAGNKLHMNTSPTTSMPCLSEESDDSNVNVAHKKQRVVINGDTIRVNFPTSSSSSSSSPTPEFCNQNWDLLPWNQLSASFQCQSPLVPSFLL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1207 503 MobiDBLite consensus disorder prediction 146 163 - -
Lele38g1207 503 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Lele38g1207 503 PANTHER CPG BINDING PROTEIN 4 232 IPR045104 GO:0006355|GO:0042393
Lele38g1207 503 SUPERFAMILY FYVE/PHD zinc finger 172 237 IPR011011 -
Lele38g1207 503 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Lele38g1207 503 Pfam PHD-finger 184 232 IPR019787 -
Lele38g1207 503 CDD PHD_AL_plant 183 233 IPR044104 -
Lele38g1207 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Lele38g1207 503 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Lele38g1207 503 SUPERFAMILY Homeodomain-like 305 359 IPR009057 -
Lele38g1207 503 Pfam MYB-CC type transfactor, LHEQLE motif 359 398 IPR025756 -
Lele38g1207 503 MobiDBLite consensus disorder prediction 137 172 - -
Lele38g1207 503 SMART PHD_3 183 231 IPR001965 -
Lele38g1207 503 Gene3D - 305 363 - -
Lele38g1207 503 FunFam PHD finger alfin-like protein 176 232 - -
Lele38g1207 503 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 306 359 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1207 Lele-ChrLele38 23051487 23059356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1207 2 230 Alfin-like Transcription Factor Family AT5G05610 78.696 5.21e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele38g1207 Alfin 6.9e-68 No_clan