Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1202 ATGGCGGACTCACATTCCGCTACATTTCAACCTCCAGTTGCTTCATCTTCAGCTTCTTCTACGGCCATTCGGGATCCATCTGCAGCTACTTCGTCAACTTCAGGATCTTCACGAGTACGCAGCCAATGGGAAAATCGAAGTCGTCACCATCGATCTCAACCCCCTGGCCTAGAGCAGCAGCAGAATGTGAGCGTCATCGGTTTGACATATCAAAATGCGTCTTCAATATCTAGGGATGATTCTTGGTCCTGCATCGTTGTTCTTTTCACCTTTTGGTTCTTTGTGTCGTTGACTATGATACTTGGAGTTTACGGTTCAATGAATCTCCTGCTTAGTCCAAGTGCTTCCATTCTTCTCCAACCTAGCCCCATATTCGTGCAATATATAAAGGTAGAAAACTTAGGGTCAAAGCCAGGAGTCATGCTCTATGGTACATACGGAACCCCTGCTCTTGATGTTTTTACTGTTTGGACAGAAACTCGTAATGTAACCTTTGCATCTGATGTGCATAAGGAATGGAAATATTACCTGAATGAAGGGTCTCAAGTAAATATTTCATATCGCATGAGCTCTGAGAGCCCTTCTATTGTTCTTGTAATTGCGGAAGGGGATGAAGGCCTCTCTCGGTGGCTGGAGGATCCATCATATCCTAATAGCGCACTCTCATGGAACATAATCCATGGAACTGGTATGATTACACAGGACATATCCAGTTCATCGAACTATTATTTGGCCCTAGGAAATTTGGATGAGGAGGAGGCAGCGGAGGTGGAACTGATCATCAAAGTAAGGTCTGCCATGTACAATACTACAGACGCTTACTACAAATGTAATTTGACTAGTGACCCATGCGGTTTGTATGTTTTCTTTCCTGATGGAAATACAGCTGTCTTAACATCTCCGGCACCACAACAGAACACATCCAGTAATCAGTGGTATATCAAATTGTCCTATGGGCCAAGATGGGTCACATATATTTTTGGCATGGGTGGATTGACTTTGCTTATGTTTTTGGTCTTCAACTACTTTAACAAGCTGCACTATTCTCAAGAAGATAGCGCGGGAATTCAATACGAGGGAACAGCACCTCAAAGAGTCCCTTTGCTTTCTCACAAAGAAGACGATGTTTCCAGCTGGGGTTCATCATATGAATCCATGTCACAAGATGAGGAGGATCTTGACCTTCTTATAGGGGATTCCATTAATGGGAAGTCTTTAGCTGATGGTGAAACCAGTAATAATACAAGGCGCCTTTGTGGAATATGCTTTGATGCTCCAAGGGATTGCTTCTTCCTTCCTTGTGGACACTGCGTGGCTTGTTTTGAATGTGCAACAAGGTTAGCAGAGGCAGAGGGTACTTGCCCCGTATGCCGTAAGAACATGAAGAAGGTGAGGAAGATATTTACTGTCTAA 1413 0.4381 MADSHSATFQPPVASSSASSTAIRDPSAATSSTSGSSRVRSQWENRSRHHRSQPPGLEQQQNVSVIGLTYQNASSISRDDSWSCIVVLFTFWFFVSLTMILGVYGSMNLLLSPSASILLQPSPIFVQYIKVENLGSKPGVMLYGTYGTPALDVFTVWTETRNVTFASDVHKEWKYYLNEGSQVNISYRMSSESPSIVLVIAEGDEGLSRWLEDPSYPNSALSWNIIHGTGMITQDISSSSNYYLALGNLDEEEAAEVELIIKVRSAMYNTTDAYYKCNLTSDPCGLYVFFPDGNTAVLTSPAPQQNTSSNQWYIKLSYGPRWVTYIFGMGGLTLLMFLVFNYFNKLHYSQEDSAGIQYEGTAPQRVPLLSHKEDDVSSWGSSYESMSQDEEDLDLLIGDSINGKSLADGETSNNTRRLCGICFDAPRDCFFLPCGHCVACFECATRLAEAEGTCPVCRKNMKKVRKIFTV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1202 470 Pfam Domain of unknown function (DUF4793) 231 339 IPR032010 -
Lele38g1202 470 FunFam E3 ubiquitin-protein ligase APD2 408 469 - -
Lele38g1202 470 SMART ring_2 419 457 IPR001841 -
Lele38g1202 470 Pfam Domain of unknown function (DUF4792) 140 207 IPR032008 -
Lele38g1202 470 Pfam Zinc finger, C3HC4 type (RING finger) 416 464 - -
Lele38g1202 470 MobiDBLite consensus disorder prediction 1 41 - -
Lele38g1202 470 PANTHER OS05G0521000 PROTEIN 59 470 - -
Lele38g1202 470 ProSiteProfiles Zinc finger RING-type profile. 419 458 IPR001841 -
Lele38g1202 470 SUPERFAMILY RING/U-box 418 464 - -
Lele38g1202 470 MobiDBLite consensus disorder prediction 1 58 - -
Lele38g1202 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 470 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1202 Lele-ChrLele38 23016769 23020979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1202 392 467 C3H Transcription Factor Family AT3G06140 30.263 3.34e-06 47.4