Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1200 ATGGCGTCTTACCAAGAAGCATTGATCATGGAGAACGGAAACCTCAAGGAACCGACCGGCAAGGAGATCTTGAGGCACGGCCGTTCGGCTCGCAAAATGTCCTCTTCCTCCTTGCGTAAGAAATCTGACCTCAGGCTTGTTTCCAAGGTTCGCTGCTCCTTGCTCCGAATTTTGTTGGCAAATCTGCAAGAGGTCATTCTCGGGACTAAGCTTTCCGTCCTTTTCCCTGCGATTCCTCTCGCCATTGCTGCCGATTGCTATGGATTCGACCGACCCTGGATTTTTGCGTTGAGCTTACTAGGACTTACACCACTTGCTGAACGAATCAGCTTCCTGACAGAACAAGTTGCTTATTACACAGGCCCCACAGTGGGAGGGCTTCTGAACGCGACATGTGGAAATGCGACAGAGCTCATAATAGCAATATTTGCTCTCAGCAACAATAAAATAGCTGTGGTCAAGTATTCTCTCTTAGGTTCCATCCTTTCAAACCTTCTCTTAGTCCTTGGAACCTCTCTTTTCTGTGGGGGCATAGCAAACCTTTCACCACAGCCACAAAAATATGACAGAAGACAAGCAGACGTGAACTCACTCATGCTTCTGCTTGCATTATTGTGCCACTTGCTTCCAATGCTTTTCAGATATACTACTGGCTCAACTGCTCTCGCTGCAGACCCATCTCTCCAATTATCAAGAGCTGCAAGTATTGTCATGTTGATCGCATATTTTGCTTACCTTGTCTTTCAACTCTGGACACATCGCCAATTATTTGAAGCCCAGGATGAAGACGAAGATAATGACAGCGTTTCAGAAGAAGCGCCAGTGATAGGATTTTGGAGTGGGTTTGCCTGGCTGGTAGGGATGACAGCGTTCATAGCATTGTTGTCTGAGTATGTGGTGGAGACAATAGAGGATGCATCAGATTCGTGGGGTTTGTCTGTCAGCTTCCTCAGCATAATTTTACTACCAATAGTGGGAAATGCAGCTGAACATGCGGGAGCAATCATTTTTGCTTTTAAGAACAATCTGGACATCTCTTTGGGTGTTGCTTTGGGTTCTGCAACTCAAATTAGCTTGTTTGTGGTTCCCTTCTGTGTGATTGTTTCTTGGATAATGGGCCACAAAATGGATCTTGACTTCAGCCCCATTGAAACGGGTTCACTTGCTTTGGCCATAATAGTCACTGCCTTCACTTTACAGGATGGAACGTCTCATTACATGAAAGAGATCACCATCCAACCAAGCTCATCTCGGCAACATGGTTGCCTAAATCGGCAACCGATGCAGTTCTCAGAGCTTAATTGTGGGTCTTGGTCTCTTTGGATTGCCTTATGA 1335 0.4599 MASYQEALIMENGNLKEPTGKEILRHGRSARKMSSSSLRKKSDLRLVSKVRCSLLRILLANLQEVILGTKLSVLFPAIPLAIAADCYGFDRPWIFALSLLGLTPLAERISFLTEQVAYYTGPTVGGLLNATCGNATELIIAIFALSNNKIAVVKYSLLGSILSNLLLVLGTSLFCGGIANLSPQPQKYDRRQADVNSLMLLLALLCHLLPMLFRYTTGSTALAADPSLQLSRAASIVMLIAYFAYLVFQLWTHRQLFEAQDEDEDNDSVSEEAPVIGFWSGFAWLVGMTAFIALLSEYVVETIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNNLDISLGVALGSATQISLFVVPFCVIVSWIMGHKMDLDFSPIETGSLALAIIVTAFTLQDGTSHYMKEITIQPSSSRQHGCLNRQPMQFSELNCGSWSLWIAL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1200 444 TIGRFAM cax: calcium/proton exchanger 76 411 IPR004798 GO:0006816|GO:0015369
Lele38g1200 444 FunFam Vacuolar cation/proton exchanger 269 413 - -
Lele38g1200 444 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 25 409 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele38g1200 444 Pfam Sodium/calcium exchanger protein 93 251 IPR004837 GO:0016020|GO:0055085
Lele38g1200 444 Pfam Sodium/calcium exchanger protein 281 399 IPR004837 GO:0016020|GO:0055085
Lele38g1200 444 TIGRFAM caca2: calcium/proton exchanger 58 409 - -
Lele38g1200 444 FunFam Vacuolar cation/proton exchanger 122 267 - -
Lele38g1200 444 Gene3D - 122 412 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1200 Lele-ChrLele38 22988491 22992381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1200 9 412 Antiporters AT2G38170 70.732 0.0 548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g1200 38 22988491 22992381 Lele39g0104 39 722804 726374 hybridization
Lele38g1200 38 22988491 22992381 Lele40g1142 40 21487066 21490783 hybridization