Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1196 ATGGAAAGTCACGAGGCACGGATAGTCAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAAAAGAAGATGGGATTGGAGCAGTTGAGCCTGAACGATACAAAGGGCAAGATCATTACTTGCAGAGCTGCGGTTGCTCATGGAGCTGGAGAACCGTTCGTGATAGAACAAGTGAAAGTCCATCCTCCTCAGAAAATGGAGGTCCGAATCAAGATCCTCTTCACTTCTATCTGCCACACAGATCTCACCGCCTGGCTCGGCCACAATGAAGCTCAAAGGGTTTATCCCAGGATTTTTGGCCATGAAGCATGCGGGATAGTGGAGAGTGTAGGGGAAGGAGTAAAGGATGTGAAGGAAGGAGATTATGTGGTTCCCATCTTCAACGGCGAGTGTGGCGACTGCGAGTTGTGCAAGTGTGAGCATACCAATATGTGCCAAAACTTCGGAGTCAACCCCATGAAGAAGGACATGGTGGCTGACGGCGCCACCAGGTTCACCACCGTCGACGGCGGAAACCCCATCTACCATTTCCTCAACACGTCGACGTTCACCGAGTACACCGTCGTCGACTCCGCTTGTGTGGTCAAGCTCACCGGCGTTGTCGATCAACATAACCTCAAAAAGCTCACCTTGCTAAGCTGCGGTGTTTCCACAGGGGTAGGAGCTGCATGGAACACGGCCAACGTGCAATCTGAGTCCATTGTTGCTATCTTCGGTTTGGGAGCAGTGGGCCTTGCTGTGGCGGAAGGCGCACGTGCCAGAGGGGCATCCAAAGTAATAGGCATAGATATCAACCCCGACAAATTCATCAAAGCTCGGGAAATGGGAGTGACGGATTTCTTAAGTCCAAGGGATGAAGAGAAGCCTGTTTACGAGAGAATAAGAGAAATGACTGGAGGAGGAGTAGACTATAGCTTTGAATGTGTTGGAAACTCTGATGTCCTCCGAAATGCCTTCTTGTCTGTTCATGAGGGATGGGGATTGACAGTGATATTGGGAATCCATGCAACGCCACAAATGCTTCCAATTCATCCAATGGAGCTGTTTGATGGTCGCAGAATTGTTGCTTCAGTCTTTGGAGGCTTCAAAGGGAGGACCCACCTCCCTCTTTTTGCCAAACAATGCTTTCAAGGAGTGGTGAAGCTGGACGAGTTCATTACTCACGAGCTACCTTTTGACGAGATTAACAAAGCCTTTGATCTTTTGGTCTCTGGAAAGTCACTGAGATGTCTTCTACACCTGTGA 1245 0.4988 MESHEARIVRRKRRRRRRRRKKKMGLEQLSLNDTKGKIITCRAAVAHGAGEPFVIEQVKVHPPQKMEVRIKILFTSICHTDLTAWLGHNEAQRVYPRIFGHEACGIVESVGEGVKDVKEGDYVVPIFNGECGDCELCKCEHTNMCQNFGVNPMKKDMVADGATRFTTVDGGNPIYHFLNTSTFTEYTVVDSACVVKLTGVVDQHNLKKLTLLSCGVSTGVGAAWNTANVQSESIVAIFGLGAVGLAVAEGARARGASKVIGIDINPDKFIKAREMGVTDFLSPRDEEKPVYERIREMTGGGVDYSFECVGNSDVLRNAFLSVHEGWGLTVILGIHATPQMLPIHPMELFDGRRIVASVFGGFKGRTHLPLFAKQCFQGVVKLDEFITHELPFDEINKAFDLLVSGKSLRCLLHL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1196 414 Pfam Zinc-binding dehydrogenase 242 361 IPR013149 -
Lele38g1196 414 SMART PKS_ER_names_mod 48 408 IPR020843 GO:0016491
Lele38g1196 414 MobiDBLite consensus disorder prediction 1 23 - -
Lele38g1196 414 SUPERFAMILY GroES-like 34 232 IPR011032 -
Lele38g1196 414 FunFam S-(hydroxymethyl)glutathione dehydrogenase 219 357 - -
Lele38g1196 414 Gene3D - 219 357 - -
Lele38g1196 414 Gene3D - 45 410 - -
Lele38g1196 414 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 207 378 IPR036291 -
Lele38g1196 414 MobiDBLite consensus disorder prediction 8 23 - -
Lele38g1196 414 PANTHER ALCOHOL DEHYDROGENASE 36 411 - -
Lele38g1196 414 SUPERFAMILY GroES-like 364 413 IPR011032 -
Lele38g1196 414 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 100 114 IPR002328 GO:0008270|GO:0016491
Lele38g1196 414 Pfam Alcohol dehydrogenase GroES-like domain 67 195 IPR013154 -
Lele38g1196 414 FunFam Alcohol dehydrogenase 6 44 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1196 Lele-ChrLele38 22960864 22969059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1196 67 403 Monolignol Biosynthesis Gene Families AT2G21890 27.147 9.06e-13 67.4