Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1195 ATGCGCAAGTCTTTCAAGGATTCCCTCAAAGCTCTTGAAGCTGATATCCAGTTCGCCAATACTCTAGCTTCTGATTACCCAAGAGATTATGATGGTGCCTGCATCCAAATGAGATTATCCTACAGTCCAGCAGCTCAATTTTTTCTTTTTCTGGTTCAGTGGACTGATTGTCACCTTGCTGGAACCTTGGGATTGCTTAGAATTCTCATATACAAGGCTTACGAGGATGGTAAGACAACAATGTCCATTTATGAAAGAAAAGCCAGTCTGAAGGAGTTCTATTGCGTGATCTTTCCCTCTTTATTGCAACTCCACAGAGGAATTACTGATGTAGAAGACAGAAAGCAAAAAGAAATATGTGCTACTAAGTATAAGTCAAAACCTGTAGTCAGCAAAGGAAAGCATTCTGAAATTGACAGAGAGAGAGAGGAAGAATGTGGCATTTGCATGGAGATGAACAGCAAGATTGTATTGCCCAATTGCAATCACTCAATGTGCATGAAATGCTATCGAGATTGGCATGCACGATCTCAGTCTTGCCCTTTCTGCCGGGACAGTCTGAAAAGAGTGAATTCTGGGGAGCTTTGGGTGTACATGAGCAACAATGAGATAGATGACATGGCTTCAATCACAAGGGAGAATTTAAAGAGGTTATTCGTTTACATTGAAAAGTTGCCTCTTCTTGTTCCAGATCCAATATTCATGTCTCGTCCTGTTCGCTGGGCTGTGGTTGTTTACCACCTTCATGTCCTCTATTTGATTCTCAGACACAGATTTTCTTCAAACACTATGGCTAGGTTTGAGAATTCAGGAACGTGTTCAGAACATTCTACATAG 837 0.4122 MRKSFKDSLKALEADIQFANTLASDYPRDYDGACIQMRLSYSPAAQFFLFLVQWTDCHLAGTLGLLRILIYKAYEDGKTTMSIYERKASLKEFYCVIFPSLLQLHRGITDVEDRKQKEICATKYKSKPVVSKGKHSEIDREREEECGICMEMNSKIVLPNCNHSMCMKCYRDWHARSQSCPFCRDSLKRVNSGELWVYMSNNEIDDMASITRENLKRLFVYIEKLPLLVPDPIFMSRPVRWAVVVYHLHVLYLILRHRFSSNTMARFENSGTCSEHST 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1195 278 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Lele38g1195 278 SUPERFAMILY RING/U-box 137 190 - -
Lele38g1195 278 FunFam RING/U-box superfamily protein 127 193 - -
Lele38g1195 278 SMART ring_2 146 183 IPR001841 -
Lele38g1195 278 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Lele38g1195 278 PANTHER RING FINGER PROTEIN 41, 151 3 235 - -
Lele38g1195 278 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Lele38g1195 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1195 Lele-ChrLele38 22951075 22953892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1195 90 188 C3H Transcription Factor Family AT5G01960 29.808 3.51e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g1195 38 22951075 22953892 Lele39g0111 39 762621 765033 hybridization
Lele38g1195 38 22951075 22953892 Lele40g1136 40 21462966 21465222 hybridization