Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1194 ATGCTGATTGGTGTTGATCACATGCTTCTTTCAGTGGATTTCCTCTATAGTGGCAAAGGGAAGGGAGCAGTAAAGAACTCTAAGGAATCACTGAAGCCTGTCAATGACAGAAAGGTCGGAAAGCGAAAGGCTGTGGCTAAACCCGACAGAAGTAGTAAATGGCAGGCCAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCACCCAGTGCTTTCTTTGTCTTCCTTGAGGAGTTCAGAGCAACCTTTAAGAAAGAAAATCCTAATGTGAAGGCAGTATCAGCTGTTGGGAAAGCTGGAGGAGCGAAATGGAAATCCATGTCTGAGGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTTATGAATGCTTATAATAAAAAGCAGGCAAGCACGGCAGATGATGGAGGTGATGAATCAGACAGGTCCAAATCTGAAATTAATGATGAAGATGAAGAGGAGGCACACCAAGAGGAAGAGGAGGAGGAGGATGAAGAAGACGACGAAGAGGAGGAGGATGACTGA 549 0.4481 MLIGVDHMLLSVDFLYSGKGKGAVKNSKESLKPVNDRKVGKRKAVAKPDRSSKWQAKAKKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAGGAKWKSMSEAEKAPYEAKAAKRKAEYEKLMNAYNKKQASTADDGGDESDRSKSEINDEDEEEAHQEEEEEEDEEDDEEEEDD 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1194 182 Pfam HMG (high mobility group) box 65 134 IPR009071 -
Lele38g1194 182 Coils Coil 155 180 - -
Lele38g1194 182 MobiDBLite consensus disorder prediction 109 130 - -
Lele38g1194 182 MobiDBLite consensus disorder prediction 97 182 - -
Lele38g1194 182 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 26 168 IPR031061 -
Lele38g1194 182 CDD HMGB-UBF_HMG-box 65 130 - -
Lele38g1194 182 MobiDBLite consensus disorder prediction 153 182 - -
Lele38g1194 182 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 65 134 IPR009071 -
Lele38g1194 182 MobiDBLite consensus disorder prediction 30 66 - -
Lele38g1194 182 SMART hmgende2 64 135 IPR009071 -
Lele38g1194 182 SUPERFAMILY HMG-box 57 137 IPR036910 -
Lele38g1194 182 Coils Coil 116 136 - -
Lele38g1194 182 Gene3D High mobility group box domain 49 148 IPR036910 -
Lele38g1194 182 MobiDBLite consensus disorder prediction 20 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1194 Lele-ChrLele38 22946848 22948957 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele38g1194 HMG_box 2.4e-24 CL0114