Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1190 ATGACGATGAAGATGAAGGAGAGAGATGAAGAGCTGGTTCTGTTCCTGGAGATGCGAAGAAGAGAGAAGGAGAATGAACGGAACACTTTTCTGCTCCTTCCAAACTCCGAAAACGACGTCGTCGACTCTTCTCATTTCGAATTTAGCTGCGGTATTTCTAGTTTAGTGCCTTCAGAGAATGGCATGTCTGATTATGGCTGGCTTCTTACACCACCAGGTACACCTCTTTTTCCTACTTTGGAGAAGGAATCACAGATTTCAGCAAAGGGTGAAACAGAGATTTCCAAAGCTCGAATAACAGCTTTAAAACCTAGGGAGACTAATATCATAACAGAACCAGCTTCAAGAAGAATTATAGCCTCAAAGACTCATAAAGTGATGCCTAATCTAAATTCTTCCAGAAATGGTAATGCTAATAGGAGACCTTCATCAACATCCCCTTCCAGATCTTCAACTTTGTCTTCAAGAACCAAATCCTCTAAGGCAACCTTAACTTCTGCTAAGCCAATAAAATCATCATCCACTCCTATACGATCTTCATCTGCATCGAAAATACGCCCTGCACTCGCAAAAAACCCAGTGAAATCACAAGGTTCCTTGCTTGATGCTCCTCCAAATTTGGAGGCTTCATTGCCTGAGAGACCAGCCTCAGCCTCTAGGTGCAGCAGATTATTATCTTCTCTTGAGGCTAAAGATAATAGTAGTAGCAGTGGAAGACCCAAAAGGCCAATCTTGAGGAGTAGATCTTGTTCAATTAATGAAGGTGAAAATGATAGCCCAGGTATGATTGGGACAAAAATGGTTGAAAGAATAGCGAACATGAGAAAACTGGCATCACCAAAGGTTAATGCGGGCCATCATTCTGCAGTTCATAATTCTTGTGGTAAGTCTGATAGCTCAGGATTTGGAAGATCACTCTCAAAGAAGACACTGGATATGGCAATGAGGCATATGGGCTCCACCTACGACCTCAGTATTAACAGGCGCAGTGTGAAAGTGTTTCCATGTCTTCATCGGGTTTCGGGCCGTATGGTGTTCTTGTTGTTTGGACTTTTTGTTGATTTAACAAATGCATATAAAAGGTTTATTAATGATAGTATTAGAGACTGGAAAAGACCAATGATTGGGAATTGCTTCGGTGCCTTGAATTGGTGTAAACCTAAACGTAGGAATTATACTGATGATCAATCACGCGAACAAGTGATATCAACCAAAAAGTTTAGTTATAATTCTTTGAGATCAGCAACAGGAGACTTTCATCCATCCAACAGAATTGGTAGAGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTACGGGATGGAACTCAAGTTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAAGGAGCAAGAGAGTTCATGACAGAAATTGATATGATATCAAATATAAGACATCCAAACCTGGTACAACTAGTTGGCTGTTGTGTAGAGGACAACCATCGCATATTGGTCTACGAATTTCTGGAAAACAATAGCCTTGCAAGCTCTTTGCTTGGTTCCAAAAGTAAACATGTTGCTCTAGATTGGCCAAAAAGGGCTTCAATTTGCCGTCATACCGCTTCTGCTCTCGCGTTTCTTCATGATGAGGTTCAGCCAAATATTGTTCATAGAGATATTAAGGCCAGCAACATACTACTTGATCGAAACTTCAATCCCAAAATAGGCGACTTTGGCCTCGCGAAACTTTTTCCTGACAATGTCACCCATCTGAGTACTCGTGTGGCTGGCACTGTGGGATATCTTGCACCAGAATATGCACTTCTAGGACAGCTTACGAAAAAGGCCGATGTGTACAGTTTTGGCATTCTCATGCTCGAAGTAATCAGCGGTAGAAGTAGCAGCAAAGCTGCATTTGGAGATAAGCTACTGGTTCTTGTGGAATGGATATGGAAGCTGAAAGAAGAAAACAGGCTTCTGGACATTGTTGATTCAGAACTAACTTCATATGACGAGGCTGAGGTCATGCGTTTCATTAAAGTTGCTCTGTTCTGTACTCAATCAGCTGTTCATCGTAGACCGACCATGAAGCAAGTTGTAGAAATGCTCTTCAAGGAAGTTCACCTCAATGACAAGGCTTTGACGGAGCCTGGAGTTTATTCGTGGCATCGTGCCTCCAAAAATGCTGTAAATTTTTCTGACGAGGCATCAACTTCTCAAGCAAAGTCTAAAAGACCTGAAAATTCATACATGGCTTCAAACCAGTTTGCTGATTCTGATATTATGACAGAGATGCTTCCGAGATGA 2265 0.4163 MTMKMKERDEELVLFLEMRRREKENERNTFLLLPNSENDVVDSSHFEFSCGISSLVPSENGMSDYGWLLTPPGTPLFPTLEKESQISAKGETEISKARITALKPRETNIITEPASRRIIASKTHKVMPNLNSSRNGNANRRPSSTSPSRSSTLSSRTKSSKATLTSAKPIKSSSTPIRSSSASKIRPALAKNPVKSQGSLLDAPPNLEASLPERPASASRCSRLLSSLEAKDNSSSSGRPKRPILRSRSCSINEGENDSPGMIGTKMVERIANMRKLASPKVNAGHHSAVHNSCGKSDSSGFGRSLSKKTLDMAMRHMGSTYDLSINRRSVKVFPCLHRVSGRMVFLLFGLFVDLTNAYKRFINDSIRDWKRPMIGNCFGALNWCKPKRRNYTDDQSREQVISTKKFSYNSLRSATGDFHPSNRIGRGGYGVVYKGVLRDGTQVAIKSLSVESKQGAREFMTEIDMISNIRHPNLVQLVGCCVEDNHRILVYEFLENNSLASSLLGSKSKHVALDWPKRASICRHTASALAFLHDEVQPNIVHRDIKASNILLDRNFNPKIGDFGLAKLFPDNVTHLSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEVISGRSSSKAAFGDKLLVLVEWIWKLKEENRLLDIVDSELTSYDEAEVMRFIKVALFCTQSAVHRRPTMKQVVEMLFKEVHLNDKALTEPGVYSWHRASKNAVNFSDEASTSQAKSKRPENSYMASNQFADSDIMTEMLPR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1190 754 Gene3D Transferase(Phosphotransferase) domain 1 495 702 - -
Lele38g1190 754 CDD STKc_IRAK 425 689 - -
Lele38g1190 754 Pfam Protein kinase domain 420 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele38g1190 754 Coils Coil 6 26 - -
Lele38g1190 754 SMART serkin_6 419 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele38g1190 754 MobiDBLite consensus disorder prediction 113 263 - -
Lele38g1190 754 ProSitePatterns Protein kinases ATP-binding region signature. 425 447 IPR017441 GO:0005524
Lele38g1190 754 Gene3D Phosphorylase Kinase; domain 1 383 494 - -
Lele38g1190 754 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 288 726 - -
Lele38g1190 754 ProSiteProfiles Protein kinase domain profile. 419 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele38g1190 754 FunFam Putative LRR receptor-like serine/threonine-protein kinase 495 701 - -
Lele38g1190 754 FunFam cold-responsive protein kinase 1 389 494 - -
Lele38g1190 754 MobiDBLite consensus disorder prediction 125 186 - -
Lele38g1190 754 MobiDBLite consensus disorder prediction 220 242 - -
Lele38g1190 754 SUPERFAMILY Protein kinase-like (PK-like) 396 690 IPR011009 -
Lele38g1190 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 541 553 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1190 Lele-ChrLele38 22920578 22928948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1190 386 739 Receptor kinase-like Gene Family AT1G56120 47.207 2.08e-103 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele38g1190 Pkinase 1.6e-46 CL0016