Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1171 ATGGAGGCTGAAGACGAAGATGTGAGGGTAGAGAGGAAACTTATCGGAAACCATGAGCGTACTCGAGACTACAAAGATCCTCCTCCGGCACCGTTGTTTGATCCCACTGAGTTATCTTCCTGGTCATTCTACCGAGCAGGCATCGTAGAGTTTGTTGCCACCTTCTTGTTCCTTTACATCGCTGTTTTAACTGTAATGGGTGTGGCTATGTCTCCCTCCAAATGCTCCACTGTGGGCGTTCAAGGCATTGCTTGGGCATTTGGTGGCATGATCTTCGCTCTTGTTTATTGTACTGCTGGTATCTCAGGGGGTCACATTAACCCAGCTGTGACATTTGGGCTGTTCTTGGCGAGGAGGGTATCAATGACTAGGGCGGTGTTCTACATAACAATGCAATGCTTGGGAGCTATTTGTGGCGTTGCAGTTCTGAAGAGGTTTCAAGGAAGCCAGTATGAGAGGCTTGGAGGGGCTGCCAATAGTGTTAGTGAAGGATACTCCATCATTAGCGGCCTTGGTGCAGAAATCATAGGCACTTTTGTGCTTGTTTATACTGTCTTCTCAGCCACTGATGCCAAACGAATCGCTCGAGATGCTCACGTCCCTATCTTGGCACCACTGTCTATTGGGTTTGCTGTGTTTGTGGTGCATTTGGCTACAATTCCTATCACAGGGACTGGGATCAACCCTGCTAGAAGTCTTGGTACAGCACTCGTTTTCAACAAGGATCGAGCTTGGGACGACCACTGGATCTTCTGGGTGGGGCCTTTTCTTGGGGCAGGACTTGCAGCTTTGTATCATGAGATAGTGATAAGGGCCATGCCCTTCAAGCTTAAGTGA 837 0.4875 MEAEDEDVRVERKLIGNHERTRDYKDPPPAPLFDPTELSSWSFYRAGIVEFVATFLFLYIAVLTVMGVAMSPSKCSTVGVQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARRVSMTRAVFYITMQCLGAICGVAVLKRFQGSQYERLGGAANSVSEGYSIISGLGAEIIGTFVLVYTVFSATDAKRIARDAHVPILAPLSIGFAVFVVHLATIPITGTGINPARSLGTALVFNKDRAWDDHWIFWVGPFLGAGLAALYHEIVIRAMPFKLK 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1171 278 Pfam Major intrinsic protein 37 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g1171 278 SUPERFAMILY Aquaporin-like 37 271 IPR023271 -
Lele38g1171 278 Gene3D Glycerol uptake facilitator protein. 30 276 IPR023271 -
Lele38g1171 278 TIGRFAM MIP: MIP family channel proteins 50 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g1171 278 CDD MIP 45 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g1171 278 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 14 273 IPR034294 -
Lele38g1171 278 FunFam Probable aquaporin PIP1-2 30 278 - -
Lele38g1171 278 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g1171 278 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g1171 278 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g1171 278 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g1171 278 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g1171 278 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele38g1171 278 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1171 Lele-ChrLele38 22810036 22811161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1171 1 278 Major Intrinsic Protein MIP AT3G61430 74.737 8.73e-151 421