Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1166 ATGCCTTCTTCTTCTACAACCATTATCTCCAAATGCACTATCTACCCAGATCAGAAATCCTCTCTTAAGACTCTCAAGCTTTCTGTCTCTGACCTTCCTATGCTCTCTTGCCATTACATTCAGAAGGGTGTTCTGCTTCCCCTCCCTCCTTACTCCTTCGACGATCTCATCGTCTTCCTCAAACACTCGCTCTCTCTCACTCTTTCCCATTTCCCAGCCCTAGCCGGCCGCCTCATCACTGATGATCTCGGCTATGTTCACATACTCTGCAATGATGCCGGAGTGGATTTTGTTCAGGCCAGGGCTAAACACCTCCTTATCGACGCAATTTACTCCCCCGAACTTGTGGATGTGCCCAATTGCTTTAAGGAGTTTTTTGTCTACGACAACACCATCTCTTATTCGGGCCACTACAACCCGCTCGTCGCCGTCCAGGTCACCGAGCTCGCCGATGGGGTGTTCATAGGATGCACCGTGAATCACTCCGTCACCGACGGGACTTCCTTCTGGCACTTCTTCAATACCTTCGCCGAGATCTGTAAGGGCGTGAAGAAGATATCGAAGTCGCCGGATTTCACCCGCGACACCGTTTTCAACTCTGCCACCGTGCTGAGAGTACCAGAAGGCGGCCCGAAGCTGACCTTCGACGCCAACCAGCCTCTACAGGAGAAAGTTTTCCACTTCAGCTGGGAGGCAATTCAGAAGCTGAAGCTCAGAGCCAACAATGGCGACCGTAACGGCTTCGCGGATTCCGCGGAGGTAATGGGGAAGCAGGTTAATGACAGTTGGAAAACCGTTAACGGCGTTACTAATGGGCAGATAACATCAGTTAACAACGACGCCCCAGCTAGGACCGGAGACATCTCATCTTTCCAATCCTTATCTGCTCAGCTGTGGCGTTCCGTGACACGTGCGAGGAAGCTGGACCCATCCAAAACGTCGACGTTCCGTATGGCGGTGAACTGTCGCCACCGTCTGAGGCCCAAGATGGATGCTTACTACTTCGGCAACGCGATTCAGAGCATCCCGACCGTCGCTGAAGTCGGCGAGATCCTGTATCGCGATCTGGGATGGTGCGCCAATCTTCTCCATGAAAACGTCGTCTCCCACGACGATGCTGTGGTGCGCCGCGGCATACAGGATTGGGAGAACGCTCCAAGGCTGTTTCCGCTGGGGAACTTCGACGGCGCAATGATCACGATGGGCAGCTCTCCGCGTTTTCCGATGTACGACAATGATTTCGGATGGGGCCGACCGCTGGCGGTGAGAAGTGGGAAGGCGAACAAATTTGACGGGAAGATCTCGGCGTTTCCGGGAAGAGAAGGGAACGGAAGTGTTGATCTGGAAGTGGTTTTGGCGCCGGAGACCATGGCGGGGCTGGAAAACGACACGGAGTTTATGCAGTACGTATCGCCGATCGGGTACGAGGATGATGAGGTGATGGCAATGATGAAGAGGAAGAATGGTAATCCAAATGGTTAG 1482 0.5337 MPSSSTTIISKCTIYPDQKSSLKTLKLSVSDLPMLSCHYIQKGVLLPLPPYSFDDLIVFLKHSLSLTLSHFPALAGRLITDDLGYVHILCNDAGVDFVQARAKHLLIDAIYSPELVDVPNCFKEFFVYDNTISYSGHYNPLVAVQVTELADGVFIGCTVNHSVTDGTSFWHFFNTFAEICKGVKKISKSPDFTRDTVFNSATVLRVPEGGPKLTFDANQPLQEKVFHFSWEAIQKLKLRANNGDRNGFADSAEVMGKQVNDSWKTVNGVTNGQITSVNNDAPARTGDISSFQSLSAQLWRSVTRARKLDPSKTSTFRMAVNCRHRLRPKMDAYYFGNAIQSIPTVAEVGEILYRDLGWCANLLHENVVSHDDAVVRRGIQDWENAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPLAVRSGKANKFDGKISAFPGREGNGSVDLEVVLAPETMAGLENDTEFMQYVSPIGYEDDEVMAMMKRKNGNPNG 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1166 493 Gene3D - 6 207 IPR023213 -
Lele38g1166 493 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 468 - -
Lele38g1166 493 Gene3D - 208 462 IPR023213 -
Lele38g1166 493 Pfam Transferase family 6 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1166 Lele-ChrLele38 22772963 22775718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1166 60 462 Monolignol Biosynthesis Gene Families AT5G48930 27.384 1.65e-35 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g1166 38 22772963 22775718 Lele39g0140 39 910783 914181 hybridization
Lele38g1166 38 22772963 22775718 Lele40g1109 40 21255995 21257419 hybridization