Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1165 ATGAAATCCAGATGTTTCTTTTCATATATATTACTGCATGCACATCAGTTTAAATCTAAAACAGGTTTAGGGTTTATGCTTCCCCCATTGATCTGTCTATTTGGGAATTTTTCCTTGGGTTTTGGAAAGAAAGCCTTTTCTAGATTCCTCAGATGGACTCCAGAAGAGAACAAGCGATTTGAGAACGCTTTGGCTCTGTATGATAAGGATACACCAGATCGTTGGCTGAAGGTGGCAGCCATGATCCCAGGCAAGACTGTGGGTGATGTGATCAAACAGTACAGAGAACTTGAAGAAGATGTCAGTATCATTGAGGCAGGGCTGTTCCCAATCCCTGGCTACAGTAACAGTTCTTTCACATTGGAGTGGGTCAATGGCCAAGGCTTTGATGGCTTCAACCAATTTTATACTTCTGGTGGAAAAAGGGGTTCCCCAACCAGGCCCTCTGAGAAGGAAAGGAAGAAAGGAGTTCCATGGACTGAAGAGGAGCACAGGCAATTTCTGATGGGGCTGAAGAAGTATGGCAAAGGGGACTGGAGAAATATCTCTCGCAATTTTGTGACAACAAGGACACCTACTCAGGTTGCAAGCCATGCTCAGAAGTATTTCATCAGGCAGCTTACAGGAGGGAAAGATAAGAGGAGATCCAGCATCCATGATATTACAATGGTCAATCTCCAAGAAACCAAACCTTCATCAGACAGTATCTGCAGATCACCTGCTTCTTCAAATCATCCTACAAAGGTTGTAAATCCACAACAGAATCAGAAATTATTCGGCATGGTTAAACAGGAATATTATGACATGCCAACAGTTTTCAATCCCACAAATGGGAACATGTTGTTGGCACCAATTTATGGGTTTTCTTCTCATGGATCGAAACCACTGCAGGAGCAGTGTATGCTCAGAGATACGCTTCATGGTATTTTAAGTGTATATGTTGAGGAGGACTCAGGATTAGACCTTAGAAGTGATTAG 978 0.4274 MKSRCFFSYILLHAHQFKSKTGLGFMLPPLICLFGNFSLGFGKKAFSRFLRWTPEENKRFENALALYDKDTPDRWLKVAAMIPGKTVGDVIKQYRELEEDVSIIEAGLFPIPGYSNSSFTLEWVNGQGFDGFNQFYTSGGKRGSPTRPSEKERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLQETKPSSDSICRSPASSNHPTKVVNPQQNQKLFGMVKQEYYDMPTVFNPTNGNMLLAPIYGFSSHGSKPLQEQCMLRDTLHGILSVYVEEDSGLDLRSD 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1165 325 MobiDBLite consensus disorder prediction 145 159 - -
Lele38g1165 325 ProSiteProfiles SANT domain profile. 159 207 IPR017884 -
Lele38g1165 325 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 51 263 IPR043363 -
Lele38g1165 325 CDD SANT 158 203 IPR001005 -
Lele38g1165 325 FunFam Transcription factor SRM1 45 111 - -
Lele38g1165 325 MobiDBLite consensus disorder prediction 135 159 - -
Lele38g1165 325 MobiDBLite consensus disorder prediction 229 249 - -
Lele38g1165 325 Pfam Myb-like DNA-binding domain 158 203 IPR001005 -
Lele38g1165 325 Pfam Myb-like DNA-binding domain 51 96 IPR001005 -
Lele38g1165 325 Gene3D - 157 207 - -
Lele38g1165 325 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 154 206 IPR006447 GO:0003677
Lele38g1165 325 Gene3D - 49 111 - -
Lele38g1165 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 207 IPR017930 -
Lele38g1165 325 ProSiteProfiles Myb-like domain profile. 151 203 IPR001005 -
Lele38g1165 325 CDD SANT 51 97 IPR001005 -
Lele38g1165 325 SMART sant 48 100 IPR001005 -
Lele38g1165 325 SMART sant 155 205 IPR001005 -
Lele38g1165 325 FunFam transcription factor MYB1R1 157 208 - -
Lele38g1165 325 ProSiteProfiles SANT domain profile. 47 102 IPR017884 -
Lele38g1165 325 SUPERFAMILY Homeodomain-like 153 206 IPR009057 -
Lele38g1165 325 SUPERFAMILY Homeodomain-like 52 105 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1165 Lele-ChrLele38 22745148 22749369 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele38g1165 Myb_DNA-binding 2.5e-12 CL0123