Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1155 ATGCTTCAGATTCGGCTTAGTAAGGTTCAAGCCCCTGAAGGTTTAGCAGGGGTGAAGCCCTCACCTGCTGAGACTGTTACAGTTACTTGTCCCGATCATCTAGTCCTTTCTGATCTTCCTGTAGCAAAGGGCATAGGTTCAGCAACTGCTACTTCACTTGTGAAGACTCTTGGTCGTCGATCTCGCCGCCAATGTGGTGACTGTGTCCACTTCTGTGTTCGTTGTGACTTCCCAATTGCAATCTATGGACGGCTGAGCCCTTGTGAGCATGCCTTCTGTCTTGATTGTGCTAGAAGTGATTCAATATGCTACCTGTGTGATGAACGAATCCAGAAAATTCAGACAATCAAAATGTTAGAAGGAATATTCATCTGTGCTGCTCCTCACTGTTTCAAGTCTTTCTTGAAGAAGTCAGAATTTGAAATGCATATCCAAGATGTACATGCTGACCTTCTCCGGCCCAATGTAGAAAAAGAAGATGGAAATGAGTCAGAGACGCTTAGTGTTTGGCAATCTGCAATGTCGGATTCTTCTGCACGAGCTGCTCAAAGGCCCGTTTTCTCGCCTGGTTCAAATTCCCAGCTACATGATCGAGAAGACAAGGCTGGTCAACAACCACCGAGAGACCAACCACCTTCAAGGCCGGTTCTGCAGCCAAAGCCACCTTCTTTTGGTCAAGTTCAAAATCACTCTGCAGATCTCCAGCCTGGCTCTAATGGAGGTATTCCCCCGGGCTTCTATCAACAAAATTCTGACATGCAGCGACCTCCACAAGAACCTTCACAGTTTACAGACCGGCATCGAGGAGTCACACTGGAGACGCCGCTCCCTGATTATCCATCCATGCATTCCTCCCAGACACCCAATTTCACAGTGCCAGTTAATGCCAACACGATGTTGAATCCTCCTGCACCATTCGGTTATCCTCCTTACCCGCCACATGATGGAGCTCCACCATTTTATGCGAACCCTTATGATATGCGTCGGCAGGACTCGGCTTCTGAAGTTGGTGGAGACCAGAGTTCCTTACTTGGTTTTCTGCCAGGTGCCGCAACCGGCCCTAATTTTCCAGCAAATTATCCCCAGCCCTTGAATGCAGGAAGTGGGGTCCTACCTTCTGAACAAGGACATGGTGGTATGGCTATGGATCCACGAGACGCTAAAGGTATATTGGCACCACAGTCCATGTCCCATCTGAACCAGAAATATTATTCCAGTGAGTTCGTACACAATGGGCATGGTTATGGTTGGCAGTATGATAATCGTGAAGCCTTTGGTGGTCAGGACTAG 1290 0.4814 MLQIRLSKVQAPEGLAGVKPSPAETVTVTCPDHLVLSDLPVAKGIGSATATSLVKTLGRRSRRQCGDCVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDERIQKIQTIKMLEGIFICAAPHCFKSFLKKSEFEMHIQDVHADLLRPNVEKEDGNESETLSVWQSAMSDSSARAAQRPVFSPGSNSQLHDREDKAGQQPPRDQPPSRPVLQPKPPSFGQVQNHSADLQPGSNGGIPPGFYQQNSDMQRPPQEPSQFTDRHRGVTLETPLPDYPSMHSSQTPNFTVPVNANTMLNPPAPFGYPPYPPHDGAPPFYANPYDMRRQDSASEVGGDQSSLLGFLPGAATGPNFPANYPQPLNAGSGVLPSEQGHGGMAMDPRDAKGILAPQSMSHLNQKYYSSEFVHNGHGYGWQYDNREAFGGQD 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1155 429 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Lele38g1155 429 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Lele38g1155 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 149 IPR013087 -
Lele38g1155 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
Lele38g1155 429 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Lele38g1155 429 MobiDBLite consensus disorder prediction 155 296 - -
Lele38g1155 429 MobiDBLite consensus disorder prediction 278 296 - -
Lele38g1155 429 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 418 IPR040383 GO:0016567|GO:0061630
Lele38g1155 429 MobiDBLite consensus disorder prediction 165 193 - -
Lele38g1155 429 MobiDBLite consensus disorder prediction 222 268 - -
Lele38g1155 429 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1155 Lele-ChrLele38 22641991 22643991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1155 1 426 C2H2 Transcription Factor Family AT5G01160 45.266 6.10e-104 311