Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele38g1107 ATGGAGCAAGGTCAATTCCGGATGTGGACGAAGAGAAAATACTCTCTGAGTTCTTCAAATCTCATCACTTCATCAACAACAAAACCCTCTTCTTCTTCTTATGATGATTCTTCATGGGAAGAGCAAGCTTTTGCTGAAGATGCTTCTGGGTCTCTTGGTGGATGCATATGGCCACCCAGATCATATACTTGCAGTTTCTGCAGAAGAGAGTTCAGATCAGCACAAGCTCTTGGAGGCCACATGAATGTTCATAGAAGAGATAGAGCCAGACTCAAGCAGCCCTCAAGCCCCCAAAACAATAATGAACTTCAAATTCCAAATACTTCTTCTTTTATGGGTTTCCTATACCCTTACAACCATAATTGTTCTACTACCAACCCTAATTCTGTTCTTGTTGCTTCTTCACCTTCTAATAAGGACATAATGGTTCCAGCTTATATTTCTTCTTCTGTTCTTCCCCCATCACAAGGACTTAAGGTGGCTTCTTCTAATTATTCTCCTCTCTATTCTTCTCCTTCTAAATCGAACAGCTCAAACTTATTGGCTGAAGCTGAGAAGATCACAGAGGTGTTGGATTTTGATGGGTGCGAGGACGATAATGGAAAATCTGATTTGACTTTTAGTTTAAATTTGGTCGTCTGTAGAGGTATGGAGACAAAGAAGAGGAGAACTTCTGAAACTGCCTCGATTCTTCCTCTCTTCCCAAATTCCAATTCTTCAGTTGAATTTGGCCCTAGCTCCAAACAAGAGCTAGATCTCGAGCTAAGGCTGGGCCAAAGCAAGCACAAGTGTGATTGGATCAGTCCTGATGAAGGCCTTAGATATATGTCTGCAGAATATCATGTCCATGAGAATCTGTATGAGTCCCATGATGTTTTACTTTTGATTCATCAGTTACTTTCAAATGATATTGCTGCATCAGTTTAG 927 0.4078 MEQGQFRMWTKRKYSLSSSNLITSSTTKPSSSSYDDSSWEEQAFAEDASGSLGGCIWPPRSYTCSFCRREFRSAQALGGHMNVHRRDRARLKQPSSPQNNNELQIPNTSSFMGFLYPYNHNCSTTNPNSVLVASSPSNKDIMVPAYISSSVLPPSQGLKVASSNYSPLYSSPSKSNSSNLLAEAEKITEVLDFDGCEDDNGKSDLTFSLNLVVCRGMETKKRRTSETASILPLFPNSNSSVEFGPSSKQELDLELRLGQSKHKCDWISPDEGLRYMSAEYHVHENLYESHDVLLLIHQLLSNDIAASV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele38g1107 308 SUPERFAMILY beta-beta-alpha zinc fingers 59 88 IPR036236 -
Lele38g1107 308 PANTHER OS07G0101800 PROTEIN 33 260 - -
Lele38g1107 308 Pfam C2H2-type zinc finger 62 86 - -
Lele38g1107 308 SMART c2h2final6 62 84 IPR013087 -
Lele38g1107 308 MobiDBLite consensus disorder prediction 78 102 - -
Lele38g1107 308 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Lele38g1107 308 Gene3D Classic Zinc Finger 59 110 - -
Lele38g1107 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Lele38g1107 308 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele38g1107 Lele-ChrLele38 22281267 22282488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele38g1107 36 93 C2H2 Transcription Factor Family AT2G37740 81.034 4.38e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele38g1107 zf-C2H2_6 5.7e-06 CL0361